Introduction to new students: Difference between revisions
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Introduction to New Students | Introduction to New Students | ||
== Programming == | == Programming == | ||
* R/C++/perl/python code snipplets / toy examples of various packages | |||
[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | |||
* How to use git | |||
== Unix == | == Unix == | ||
== Tools == | == Tools == | ||
== Resources == | == Resources == | ||
[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | ||
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]). | Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]). | ||
Revision as of 18:36, 15 July 2010
Introduction to New Students
Programming
- R/C++/perl/python code snipplets / toy examples of various packages
- How to use git
Unix
Tools
Resources
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[1]]).
A dedicated introduction page is here: [How to use git]
- Tools howto - with examples - samtools, PLINK, MERLIN, bwa, etc
Samtools [Manual]
PLINK [Homepage]
MERLIN [Homepage]
BWA[Homepage ]
- SAM/VCF format documentation
- UNIX 101
CSG Documentation [AWK, BASH, UNIX commands and etc.]
- Collection of useful resources/links
Group Chat [instant Messaging]
