User contributions for Pha

22 June 2010

• 10:4810:48, 22 June 2010 diff hist +1 m Main Page →Sequence Analysis Tools: change name
• 10:4710:47, 22 June 2010 diff hist +4 BamGenotypeCheck rename again
• 10:4610:46, 22 June 2010 diff hist +30 N GenotypeIDcheck moved GenotypeIDcheck to BamGenotypeCheck: a better name was suggested current
• 10:4610:46, 22 June 2010 diff hist 0 m BamGenotypeCheck moved GenotypeIDcheck to BamGenotypeCheck: a better name was suggested

21 June 2010

• 11:1911:19, 21 June 2010 diff hist +18 m Software change layout a little
• 11:0611:06, 21 June 2010 diff hist +488 BamGenotypeCheck total rewrite - new program
• 10:2310:23, 21 June 2010 diff hist −1 m Main Page rename BAMidentity check to genotypeIDcheck to match new program name
• 10:2210:22, 21 June 2010 diff hist +29 N BamIdentityCheck moved BamIdentityCheck to GenotypeIDcheck: now matches the new program name current
• 10:2210:22, 21 June 2010 diff hist 0 m BamGenotypeCheck moved BamIdentityCheck to GenotypeIDcheck: now matches the new program name

8 June 2010

• 09:4909:49, 8 June 2010 diff hist +27 m BAM Review Action Items add new name options, spelling corrections

20 April 2010

• 14:1814:18, 20 April 2010 diff hist +88 Verifying Sample Identities - Implementation →Mathematical Details

13 April 2010

• 16:3716:37, 13 April 2010 diff hist +320 C++ Class: Pedigree Example →Example current
• 16:3516:35, 13 April 2010 diff hist +532 C++ Class: Pedigree Example →Example
• 16:3116:31, 13 April 2010 diff hist +1 C++ Class: Pedigree Example →Example
• 16:3116:31, 13 April 2010 diff hist +1,000 N C++ Class: Pedigree Example Created page with '== Example == <source lang="cpp"> #include "Pedigree.h" int main(int argc, char ** argv); { Pedigree ped; // The data file contains a description of the contents of the…'
• 16:2416:24, 13 April 2010 diff hist +200 Verifying Sample Identities - Implementation →Mathematical Details
• 16:2016:20, 13 April 2010 diff hist +574 Verifying Sample Identities - Implementation →Mathematical Details
• 16:0916:09, 13 April 2010 diff hist +79 Verifying Sample Identities - Implementation →Mathematical Details
• 16:0316:03, 13 April 2010 diff hist +1,786 Verifying Sample Identities - Implementation →Mathematical Details
• 15:5215:52, 13 April 2010 diff hist +233 Verifying Sample Identities - Implementation →Mathematical Details
• 15:4915:49, 13 April 2010 diff hist −8 Verifying Sample Identities - Implementation →Mathematical Details
• 15:4915:49, 13 April 2010 diff hist +78 Verifying Sample Identities - Implementation No edit summary
• 15:4715:47, 13 April 2010 diff hist +1,533 N Verifying Sample Identities - Implementation Created page with '== Principle == We should be able to verify that the right sample has been sequenced by comparing base calls in a read to known genotypes for a sample. If the sample has been s…'

9 April 2010

• 10:3010:30, 9 April 2010 diff hist +402 Karma →Karma CHANGELOG: fill in 0.9.0 changes
• 10:0110:01, 9 April 2010 diff hist +478 Karma add TODO items and begin listing change history

8 April 2010

• 15:2215:22, 8 April 2010 diff hist +372 Karma add features/benefits
• 15:1315:13, 8 April 2010 diff hist +1 Karma →Other useful links
• 15:1315:13, 8 April 2010 diff hist +70 Karma →Karma Performance Tuning
• 15:1115:11, 8 April 2010 diff hist +477 Karma fill in build info
• 15:0515:05, 8 April 2010 diff hist +166 Karma →Dependencies: fill em in
• 15:0315:03, 8 April 2010 diff hist +3,588 Karma fill in performance details
• 14:3614:36, 8 April 2010 diff hist −169 Karma add mapping examples
• 14:2514:25, 8 April 2010 diff hist +930 Karma populate alignment section
• 14:0714:07, 8 April 2010 diff hist +84 m Karma →Testing the build: more detail
• 14:0714:07, 8 April 2010 diff hist +493 Karma →Testing the build: flesh it out
• 14:0414:04, 8 April 2010 diff hist +2,684 Karma lots of changes for karma 0.9
• 13:3213:32, 8 April 2010 diff hist −1 m GlfSingle spell it correctly
• 13:3213:32, 8 April 2010 diff hist +24 m GlfSingle add software category
• 13:1213:12, 8 April 2010 diff hist +23 m Karma add software category
• 12:2312:23, 8 April 2010 diff hist +15 m Main Page →Sequence Analysis Tools: pretty up the software link
• 12:2212:22, 8 April 2010 diff hist −970 Main Page move most detail to Software page - this tightens up the Main page for easier browsing
• 12:1612:16, 8 April 2010 diff hist +72 Software update w/changes from mktrost

7 April 2010

• 17:0717:07, 7 April 2010 diff hist +746 Karma →Options: prepare for karma 0.9
• 16:5416:54, 7 April 2010 diff hist −1 Karma →Align ABI SOLiD Reads: fix argument order
• 16:5316:53, 7 April 2010 diff hist 0 Karma →Align Illumina Reads: fix argument order

29 March 2010

• 10:1010:10, 29 March 2010 diff hist +1,425 N Software Created page with '= Software Page Overview = This page points to downloads, documentation, and papers for software that is written here at the [http://genome.sph.umich.edu Center for Statistical …'

26 March 2010

• 09:4109:41, 26 March 2010 diff hist +113 Read Mapping clean up karma comments

15 January 2010

• 12:2612:26, 15 January 2010 diff hist +275 FastQValidator fill in additional key information and corrections

13 November 2009

• 13:4413:44, 13 November 2009 diff hist +54 m Main Page more info
• 13:4213:42, 13 November 2009 diff hist +55 m Main Page add info