User contributions for Hmkang
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18 June 2014
- 00:0700:07, 18 June 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:0600:06, 18 June 2014 diff hist +132 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:0500:05, 18 June 2014 diff hist +713 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 00:0300:03, 18 June 2014 diff hist −1 SeqShop: Analysis of Structural Variation Practical, June 2014 →Overview of GotCloud/GenomeSTRiP pipeline
- 00:0200:02, 18 June 2014 diff hist +346 SeqShop: Analysis of Structural Variation Practical, June 2014 →Setup your run environment
17 June 2014
- 23:5623:56, 17 June 2014 diff hist +53 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 23:5523:55, 17 June 2014 diff hist 0 N File:Genomestrip discovery screenshot.png No edit summary current
- 23:5323:53, 17 June 2014 diff hist +26 SeqShop: Analysis of Structural Variation Practical, June 2014 →Setup your run environment
- 23:5223:52, 17 June 2014 diff hist +3,323 SeqShop: Analysis of Structural Variation Practical, June 2014 →Run GotCloud/GenomeSTRiP pipeline
- 23:1423:14, 17 June 2014 diff hist −6 SeqShop: Analysis of Structural Variation Practical, June 2014 →Run GotCloud/GenomeSTRiP pipeline
- 15:1015:10, 17 June 2014 diff hist +833 SeqShop: Analysis of Structural Variation Practical, June 2014 No edit summary
- 14:5614:56, 17 June 2014 diff hist −185 SeqShop: Analysis of Structural Variation Practical, June 2014 →Reference Files
- 14:5614:56, 17 June 2014 diff hist +990 SeqShop: Analysis of Structural Variation Practical, June 2014 No edit summary
- 14:4714:47, 17 June 2014 diff hist +21 SeqShop: Analysis of Structural Variation Practical, June 2014 →Reference Files
- 14:4614:46, 17 June 2014 diff hist +971 SeqShop: Analysis of Structural Variation Practical, June 2014 No edit summary
- 09:4609:46, 17 June 2014 diff hist −54 SeqShop: Analysis of Structural Variation Practical, June 2014 No edit summary
- 09:4309:43, 17 June 2014 diff hist −3 SeqShop: Analysis of Structural Variation Practical, June 2014 →Genotype Refinement Output
- 09:3909:39, 17 June 2014 diff hist +1 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Header
- 09:3709:37, 17 June 2014 diff hist 0 N File:Gotcloudmemotyexome.png No edit summary current
- 09:3609:36, 17 June 2014 diff hist 0 N File:Gotcloudruntimewgs.png No edit summary current
- 09:2209:22, 17 June 2014 diff hist +167 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Run GotCloud SnpCall
- 09:1909:19, 17 June 2014 diff hist 0 N File:Gotcloudoverview.png No edit summary current
- 02:3102:31, 17 June 2014 diff hist −1 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 02:2902:29, 17 June 2014 diff hist +32 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Examining GotCloud indel Ouptut
- 02:2802:28, 17 June 2014 diff hist +521 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 02:2702:27, 17 June 2014 diff hist 0 N File:Samtoolsviewindel.png No edit summary current
- 02:2202:22, 17 June 2014 diff hist +135 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Did I find interesting variants?
- 02:2102:21, 17 June 2014 diff hist +915 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Did I find interesting variants?
- 02:2002:20, 17 June 2014 diff hist 0 N File:Samtoolstviewsnp.png No edit summary current
- 01:4201:42, 17 June 2014 diff hist +35 SeqShop: Analysis of Structural Variation Practical, June 2014 No edit summary
- 01:4101:41, 17 June 2014 diff hist +13,984 N SeqShop: Analysis of Structural Variation Practical, June 2014 Created page with "==Introduction== See the introductory slides for an intro to this tutorial. == Goals of This Session == * What we want to learn is ca..."
- 01:1401:14, 17 June 2014 diff hist −528 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Records
- 01:0201:02, 17 June 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 01:0101:01, 17 June 2014 diff hist +2 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 01:0101:01, 17 June 2014 diff hist +1,874 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Examining GotCloud indel Ouptut
- 00:5000:50, 17 June 2014 diff hist 0 File:EvsAPOL1b.png Hmkang uploaded a new version of "File:EvsAPOL1b.png" current
- 00:4300:43, 17 June 2014 diff hist +15 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Did I find interesting variants?
- 00:4000:40, 17 June 2014 diff hist 0 N File:EvsAPOL1b.png No edit summary
- 00:4000:40, 17 June 2014 diff hist 0 N File:EvsAPOL1a.png No edit summary current
- 00:1400:14, 17 June 2014 diff hist +529 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Genotype Refinement Output
16 June 2014
- 23:4323:43, 16 June 2014 diff hist +75 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 23:4223:42, 16 June 2014 diff hist +172 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 23:3923:39, 16 June 2014 diff hist +258 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Run GotCloud Align
- 23:3623:36, 16 June 2014 diff hist 0 N File:Gotcloud align detail.png No edit summary current
- 23:3123:31, 16 June 2014 diff hist +9 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtering Summary Statistics
- 23:3123:31, 16 June 2014 diff hist +116 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtering Summary Statistics
- 23:3023:30, 16 June 2014 diff hist +7 Understanding vcf-summary output →Rows of vcf-summary output has three sections
- 23:2923:29, 16 June 2014 diff hist −1 Understanding vcf-summary output →What should we expect from good SNP call sets?
- 23:2923:29, 16 June 2014 diff hist +3,751 Understanding vcf-summary output No edit summary
- 22:4622:46, 16 June 2014 diff hist +1,284 N Understanding vcf-summary output Created page with "== What is vcf-summary? == <code>vcf-summary</code> is a utility included in GotCloud that helps evaluate the quality of SNP calls. Because GotCloud will automaticall..."