Difference between revisions of "Introduction to new students"
From Genome Analysis Wiki
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[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | ||
* How to use git | * How to use git | ||
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Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]). | Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]). | ||
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A dedicated introduction page is here: | A dedicated introduction page is here: | ||
[[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]] | [[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]] | ||
| − | + | == Unix == | |
| + | CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]] | ||
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| + | == Tools == | ||
Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]] | Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]] | ||
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BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]] | BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]] | ||
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| + | == Resources == | ||
* SAM/VCF format documentation | * SAM/VCF format documentation | ||
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[[http://genome.sph.umich.edu/wiki/VCF VCF specification]] | [[http://genome.sph.umich.edu/wiki/VCF VCF specification]] | ||
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Group Chat [[https://statgen.sph.umich.edu/wiki/Instant_Messaging instant Messaging]] | Group Chat [[https://statgen.sph.umich.edu/wiki/Instant_Messaging instant Messaging]] | ||
Revision as of 18:38, 15 July 2010
Introduction to New Students
Programming
- R/C++/perl/python code snipplets / toy examples of various packages
- How to use git
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[1]]). A dedicated introduction page is here: [How to use git]
Unix
CSG Documentation [AWK, BASH, UNIX commands and etc.]
Tools
Samtools [Manual]
PLINK [Homepage]
MERLIN [Homepage]
BWA[Homepage ]
Resources
- SAM/VCF format documentation
Group Chat [instant Messaging]
