Introduction to new students

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Introduction to New Students

Programming

Unix

Tools

Resources

  • R/C++/perl/python code snipplets / toy examples of various packages

[Internal Resources]

  • How to use git

Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[1]]).

A dedicated introduction page is here: [How to use git]

  • Tools howto - with examples - samtools, PLINK, MERLIN, bwa, etc

Samtools [Manual]

PLINK [Homepage]

MERLIN [Homepage]

BWA[Homepage ]

  • SAM/VCF format documentation

[SAM specification]

[VCF specification]

  • UNIX 101

CSG Documentation [AWK, BASH, UNIX commands and etc.]

  • Collection of useful resources/links

Group Chat [instant Messaging]

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