Difference between revisions of "LibStatGen Download"
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== Download == | == Download == | ||
− | Click the link to download the tar of the statgen library and tools: [[Media:StatGen.0.1. | + | Click the link to download the tar of the statgen library and tools: [[Media:StatGen.0.1.4.tgz|StatGen.0.1.4.tgz]] - Released 1/21/2011 |
'''If you use this software, please e-mail me, Mary Kate Trost, at mktrost@umich.edu''' | '''If you use this software, please e-mail me, Mary Kate Trost, at mktrost@umich.edu''' | ||
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* This software requires openssl and md5 (libssl-dev on ubuntu) | * This software requires openssl and md5 (libssl-dev on ubuntu) | ||
− | * '''Current Release Notes''' (1/19/2011 | + | * '''Current Release Notes''' (1/21/2011) |
+ | ** Added the following programs: | ||
+ | *** glfMerge | ||
+ | *** glfMultiples | ||
+ | |||
+ | |||
+ | === Problems in Current Release === | ||
+ | Let me know if you experience any of these problems as we may already have a fix you can use: | ||
+ | |||
+ | * None reported yet. | ||
+ | |||
+ | |||
+ | === Previous Versions === | ||
+ | * [[Media:StatGen.0.1.3.tgz|StatGen.0.1.3.tgz]] - Released 1/19/2011 | ||
** Added the following programs: | ** Added the following programs: | ||
*** mgpileup | *** mgpileup | ||
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** OTHER | ** OTHER | ||
*** removed zlib from being included in the repository. | *** removed zlib from being included in the repository. | ||
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* [[Media:StatGen.0.1.2.tgz|StatGen.0.1.2.tgz]] - Released 11/09/2010 | * [[Media:StatGen.0.1.2.tgz|StatGen.0.1.2.tgz]] - Released 11/09/2010 | ||
** FASTQ | ** FASTQ |
Revision as of 13:19, 21 January 2011
Download
Click the link to download the tar of the statgen library and tools: StatGen.0.1.4.tgz - Released 1/21/2011
If you use this software, please e-mail me, Mary Kate Trost, at mktrost@umich.edu
This version is recommended for Unix users with access to the GNU C++ compiler.
To install, unpack the downloaded file (tar xvf), cd into the statgen directory and type make.
Notes
- This software requires zlib to be installed on your machines.
- This software requires openssl and md5 (libssl-dev on ubuntu)
- Current Release Notes (1/21/2011)
- Added the following programs:
- glfMerge
- glfMultiples
- Added the following programs:
Problems in Current Release
Let me know if you experience any of these problems as we may already have a fix you can use:
- None reported yet.
Previous Versions
- StatGen.0.1.3.tgz - Released 1/19/2011
- Added the following programs:
- mgpileup
- thunderVCF
- vcfCooker
- verifyBamID
- BAM
- Fixed bug in SamQuerySeqWithRefIter
- Add handling of the reference to the SAM Library to allow the conversion of SAM Record Sequence to/from using '=' or just bases.
- Add the conversion to/from '=' in the sequence to the bam Convert program.
- Add the ability to read the header when opening a BAM/SAM file.
- Update SetReadSection to reset the data for validating sorting since it can jump around in the file.
- GLF
- Fixed bug that incorrectly wrote GLF Records of type 2
- Add capability to consume remaining records when getNextRefSection is called. Also when writing automatically write the End Marker if it was not already written when a new RefSection is written or when the file is closed.
- FastQ
- Add option to not check for uniqueness of the sequence identifier
- OTHER
- removed zlib from being included in the repository.
- Added the following programs:
- StatGen.0.1.2.tgz - Released 11/09/2010
- FASTQ
- Add option to disable the unique sequence identifier check since that uses a lot of memory.
- GLF
- Automatically write the End Maker record when writing GLF files.
- Add capability of consuming records to get to the next reference section.
- Fixed bug in writing GLF records of type 2.
- Other
- Remove ZLIB from being contained within the repository (having zlib in the repository may have caused some compile issues in the previous version).
- FASTQ
- StatGen.0.1.1.tgz - Released 11/09/2010
- Added QPLOT to the release
- Made lib/general/StringBasics.h method IsEmpty const
- Removed an unimplemented method from GlfRecord.h
- StatGen.0.1.0.tgz - Released 11/02/2010
- Original version.