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Revision as of 20:22, 14 June 2014
, 20:22, 14 June 2014→Run GotCloud Align
== Run GotCloud Align ==
== Run GotCloud Align ==
Now that we have all of our input files, we need just a simple command to run
Now that we have all of our input files, we need just a simple command to run them
${GC}/gotcloud/gotcloud align --conf ${GC}/inputs/gotcloud.conf --numcs 2
${GC}/gotcloud align --conf ${IN}/gotcloud.conf --numcs 2
* <code>--numcs</code> means to run 2 samples at a time.
* <code>--numcs</code> means to run 2 samples at a time.
** Depends on your system
** How many you can run concurrently depends on your system
[[File:gcalignStart.png|850px]]
[[File:gcalignStart.png|850px]]
This should take < 4 minutes to run.
This should take 1-3 minutes to run.
It should end with a line like: <code>Processing finished in 133 secs with no errors reported</code>
It should end with a line like: <code>Processing finished in 133 secs with no errors reported</code>
