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Jump to navigationJump to search- 06:43, 30 March 2010 diff hist +294 METAL Quick Start →The Glucose Data
- 06:40, 30 March 2010 diff hist +1 METAL Quick Start →Learning by Example
- 06:40, 30 March 2010 diff hist +841 N METAL Quick Start Created page with '== Learning by Example == Many people find that it easiest to learn by example. So, if reading through our ''extensive'' [METAL Documentation|documentation] is not for you, you …'
- 06:13, 30 March 2010 diff hist +218 METAL Documentation
- 06:08, 30 March 2010 diff hist +33 N Metal Documentation moved Metal Documentation to METAL Documentation current
- 06:08, 30 March 2010 diff hist 0 m METAL Documentation moved Metal Documentation to METAL Documentation
- 05:59, 30 March 2010 diff hist -3 Biostatistics 666: Relationship Checking →Recommended Reading current
- 05:59, 30 March 2010 diff hist +529 N Biostatistics 666: Relationship Checking Created page with '== Objective == Introduce the idea that checking genetic relationships is a critical part of genetic studies. Discuss different approaches for checking genetic relationships and…'
- 05:56, 30 March 2010 diff hist +131 N File:666.17.pdf Describes approaches for multipoint analysis in different relative pairs. Describes approaches for checking genetic relationships.
- 05:55, 30 March 2010 diff hist +73 Biostatistics 666: Main Page →Class Notes
- 11:13, 25 March 2010 diff hist +2 METAL Documentation →Advanced Analysis Options
- 11:13, 25 March 2010 diff hist -1 METAL Documentation →Advanced Analysis Options
- 11:11, 25 March 2010 diff hist +11 METAL Documentation →Usage instructions
- 11:10, 25 March 2010 diff hist -29 METAL Documentation →Analyze Heterogeneity
- 11:10, 25 March 2010 diff hist +8 METAL Documentation →Filtering
- 11:09, 25 March 2010 diff hist +223 METAL Documentation →Filtering
- 11:08, 25 March 2010 diff hist +33 METAL Documentation
- 11:06, 25 March 2010 diff hist +333 METAL Documentation →Performing the Final Analysis
- 11:05, 25 March 2010 diff hist -552 METAL Documentation →Filtering
- 11:04, 25 March 2010 diff hist +664 METAL Documentation →Input File Columns
- 11:01, 25 March 2010 diff hist -418 METAL Documentation →Verbose Mode
- 10:57, 25 March 2010 diff hist -2 METAL Documentation →Example: A METAL Meta-Analysis Script
- 10:57, 25 March 2010 diff hist +7 METAL Documentation →Example text file to run metal;
- 10:56, 25 March 2010 diff hist +6 METAL Documentation
- 10:55, 25 March 2010 diff hist -325 METAL Documentation
- 10:46, 25 March 2010 diff hist +514 METAL Documentation →Input Files
- 10:44, 25 March 2010 diff hist -361 METAL Documentation →Input File Recommendations
- 10:29, 25 March 2010 diff hist +1,511 METAL Documentation
- 03:17, 25 March 2010 diff hist +312 METAL Documentation
- 03:06, 25 March 2010 diff hist +97 METAL Documentation →Authors
- 03:04, 25 March 2010 diff hist +1,674 METAL Documentation →Usage instructions
- 02:42, 25 March 2010 diff hist +1,089 METAL Documentation
- 02:26, 25 March 2010 diff hist +37 N Metal Command Reference moved Metal Command Reference to METAL Command Reference current
- 02:26, 25 March 2010 diff hist 0 m METAL Command Reference moved Metal Command Reference to METAL Command Reference
- 02:26, 25 March 2010 diff hist +26 METAL →Useful Wiki Pages
- 02:25, 25 March 2010 diff hist +4 METAL →Useful Wiki Pages
- 02:23, 25 March 2010 diff hist +489 N METAL Created page with 'METAL is a program that facilitates the meta-analysis of genomewide association scans. == Useful Wiki Pages == There are a few pages in this Wiki that may be useful to METAL us…'
- 02:21, 25 March 2010 diff hist +2 METAL FAQ
- 02:20, 25 March 2010 diff hist -8 METAL FAQ
- 02:19, 25 March 2010 diff hist +24 METAL FAQ
- 02:18, 25 March 2010 diff hist +960 N METAL FAQ Created page with 'This is the Frequently Asked Questions page for the [METAL Program] ;# Metal checks whether the direction of effect is positive or negative when combining information across sam…'
- 13:01, 24 March 2010 diff hist +133 GlfSingle
- 12:24, 24 March 2010 diff hist -7 GlfSingle →Command Line Options
- 11:04, 24 March 2010 diff hist +67 Biostatistics 666: Main Page →Scheduling
- 11:01, 24 March 2010 diff hist +324 Biostatistics 666: Main Page
- 19:39, 23 March 2010 diff hist +165 FASTA current
- 19:37, 23 March 2010 diff hist -2 FASTA →Example
- 19:37, 23 March 2010 diff hist +680 N FASTA Created page with 'A simple text format for storing DNA sequences. A FASTA file can store one or more DNA sequences. Each record in a FASTA file begins with a > character (which must be the fir…'
- 19:33, 23 March 2010 diff hist +2 Biostatistics 666: Multipoint Analysis in Sibling Pairs →Slides current
- 19:33, 23 March 2010 diff hist +154 N Biostatistics 666: Multipoint Analysis in Sibling Pairs Created page with '== Outline == This lecture introduces the principles behind multipoint analysis of sibling pairs. == Slides == [Media:666.16.pdf|Slides in PDF Format]'
- 16:18, 23 March 2010 diff hist +133 N Merlin Created page with 'A program for linkage and association analysis in human pedigrees. See [http://www.sph.umich.edu/csg/abecasis/Merlin/ Merlin Website]'
- 16:17, 23 March 2010 diff hist +449 N Phred scale Created page with 'A scale commonly used to measure data quality and error rates in sequence analysis. It was popularized by Phil Green's PHRED base-calling software. It is defined as: <math> …' current
- 12:42, 23 March 2010 diff hist 0 MediaWiki:Sidebar
- 12:42, 23 March 2010 diff hist +11 MediaWiki:Sidebar
- 12:42, 23 March 2010 diff hist +2 MediaWiki:Sidebar
- 12:41, 23 March 2010 diff hist +30 MediaWiki:Sidebar
- 12:38, 23 March 2010 diff hist +17 Abecasis Lab →Staff
- 10:28, 23 March 2010 diff hist +122 Abecasis Lab →Former Research Fellows
- 10:25, 23 March 2010 diff hist +450 Abecasis Lab →Former Research Fellows
- 10:16, 23 March 2010 diff hist +698 Abecasis Lab →Former Doctoral Students
- 10:09, 23 March 2010 diff hist +188 Abecasis Lab →Former Doctoral Students
- 10:08, 23 March 2010 diff hist +27 Abecasis Lab →Former Doctoral Students
- 07:43, 23 March 2010 diff hist +382 N Biostatistics 666: The Possible Triangle Constraint Created page with '== Content == Show how simple genetic models can be used to predict similarity between relative pairs and IBD sharing among sibling pairs. Introduce the possible triangle constr…' current
- 07:15, 23 March 2010 diff hist +1 Biostatistics 666: Linkage Tests for Pairs of Individuals →Recommended Reading
- 07:15, 23 March 2010 diff hist -132 Biostatistics 666: Linkage Tests for Pairs of Individuals →Recommended Reading
- 07:15, 23 March 2010 diff hist +648 N Biostatistics 666: Linkage Tests for Pairs of Individuals Created page with '== Overview == This lecture introduces simple linkage tests in the context of affected sibling pairs. One test, originally described by Bishop and Williamson (1990) focuses on i…'
- 07:11, 23 March 2010 diff hist +172 Biostatistics 666: Main Page →Class Notes
- 07:09, 23 March 2010 diff hist +64 N File:666.16.pdf Introduces multipoint analysis, in the context of sibling pairs.
- 07:09, 23 March 2010 diff hist +135 N File:666.15.pdf Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint. current
- 07:17, 18 March 2010 diff hist +31 N MapabilityScores moved MapabilityScores to MappabilityScores current
- 07:17, 18 March 2010 diff hist 0 m MappabilityScores moved MapabilityScores to MappabilityScores current
- 07:17, 18 March 2010 diff hist 0 N File:666.14.pdf current
- 07:17, 18 March 2010 diff hist +90 Biostatistics 666: Main Page →Class Notes
- 04:37, 11 March 2010 diff hist -7 LocusZoom →Generate single plots using our publicly-available lipids GWAS data
- 04:35, 11 March 2010 diff hist -66 LocusZoom
- 04:28, 11 March 2010 diff hist -13 LocusZoom →Upload your own meta-analysis file and generate single plots using a web-based form
- 05:39, 8 March 2010 diff hist 0 ExomePicks →Download
- 04:09, 4 March 2010 diff hist +96 ExomePicks
- 04:07, 4 March 2010 diff hist 0 ExomePicks →Download
- 09:45, 3 March 2010 diff hist -1 ExomePicks →Download
- 09:45, 3 March 2010 diff hist +1 ExomePicks →Download
- 09:44, 3 March 2010 diff hist +9 ExomePicks →Download
- 09:44, 3 March 2010 diff hist +3,009 ExomePicks
- 09:28, 3 March 2010 diff hist +11 ExomePicks →Input Files
- 09:28, 3 March 2010 diff hist +2,420 N ExomePicks Created page with ''''ExomePicks''' is a program that suggests individuals to be sequenced in a large pedigree. '''ExomePicks''' assumes that a genotyping chip or another cost effective means will …'
- 03:00, 22 February 2010 diff hist +913 N Biostatistics 666: Association Tests in Structured Populations Created page with ' == Overview == This lecture introduces the problem of population stratification in the context of genetic association studies. It also discusses three possible strategies for h…'
- 02:56, 22 February 2010 diff hist +234 N File:666.13.pdf Introduces the problem of population stratification in the context of an association study. Discusses three possible solutions: a) Family based association tests. b) The genomic control method. c) Genotype based matching approaches.
- 02:54, 22 February 2010 diff hist +95 Biostatistics 666: Main Page →Class Notes
- 16:52, 19 February 2010 diff hist +1,228 N Outcomes For Mapping A Paired End Created page with '== Basics == Paired end reads have an expected relative orientation (for example, FR are expected to map to opposite strands of the genome) and distance (for example, 500 bp +/-…' current
- 08:20, 18 February 2010 diff hist +12 Biostatistics 666: Main Page →Course History
- 08:19, 18 February 2010 diff hist +940 N Biostatistics 666: Haplotype Association Tests Created page with '== Objective == This page introduces the idea of haplotype association tests. It includes a discussion of when haplotype association tests might be preferable to single marker a…'
- 08:15, 18 February 2010 diff hist +39 N File:666.12.pdf Introduces Haplotype Association Tests.
- 08:15, 18 February 2010 diff hist +79 Biostatistics 666: Main Page →Class Notes
- 02:42, 17 February 2010 diff hist -738 1000 Genomes Project Pilot 1 SNP Calling
- 02:40, 17 February 2010 diff hist -191 1000 Genomes Project Pilot 1 SNP Calling
- 17:45, 16 February 2010 diff hist -3 1000 Genomes Project Pilot 1 SNP Calling
- 23:01, 15 February 2010 diff hist -1 Biostatistics 666: Advanced Coalescent, Computation with the Coalescent →Guest Lecturer current
- 23:00, 15 February 2010 diff hist -1 Biostatistics 666: Advanced Coalescent, Changing Population Size →Guest Lecturer current
- 22:59, 15 February 2010 diff hist 0 File:666.10.pdf uploaded a new version of "File:666.10.pdf": Introduction to E-M Algorithm in Genetics. This version fixes reference to Excoffier and Slatkin paper.
- 22:58, 15 February 2010 diff hist 0 File:666.09.pdf uploaded a new version of "File:666.09.pdf": Fixed reference to Excoffier paper.