User contributions
19 November 2009
VcfCodingSnps
no edit summary
-22
Main Page
Sequence Analysis Tools
+90
VcfCodingSnps
moved AnnoVcf to VcfCodingSnps: Better name
m
18 November 2009
16 November 2009
FastQValidator
Created page with '== Status == The FastQ Validator is on our Todo List. == Valid FastQ File Requirements == A valid fastQ file should meet the following requirements: * A base sequence sho…'
Karma-colorspace
Input file requirement
-1
Karma-colorspace
Input file requirement
-38
Main Page
Welcome!
+6
Main Page
Welcome!
+233
15 November 2009
Main Page
Variant Calling
+1
Abecasis Lab
no edit summary
+190
Abecasis Lab
Former Doctoral Students
+1
Abecasis Lab
no edit summary
+81
Abecasis Lab
Current Members
+10
Abecasis Lab
Created page with '== Current Members == === Research Faculty === Hyun Min Kang === Research Fellows === Bingshan Li === Graduate Students === Wei Chen Jun Ding Youna Hu Elizabeth Jewell Yanm…'
Genome Analysis Wiki:About
Created page with 'This wiki documents useful tools and protocols for genome analysis. It is maintained by the Abecasis Lab at the [http://www.umich.edu University of Michigan] [http://csg.sp…'
GlfTrio
TODO
+116
GlfSingle
no edit summary
+171
GlfMultiples
Created page with ''''glfMultiples''' is a GLF-based variant caller for next-generation sequencing data. It takes a set of GLF format genotype likelihood files as input and generates a [[VC…'
GLF
no edit summary
+103
GlfTrio
Filtering According to Depth and Map Quality
+10
GlfTrio
Basic Usage Example
+39
GlfTrio
Basic Usage Example
+152
GlfTrio
Filtering According to Depth and Map Quality
GlfTrio
Basic Output Options
GlfTrio
X Chromosome Variant Calling
GlfTrio
Sample Labels
GlfTrio
Filtering According to Depth and Map Quality
-8
GlfTrio
Basic Output Options
-8
GlfTrio
Created page with ''''glfTrio''' is a GLF-based variant caller for next-generation sequencing data. It takes three GLF format genotype likelihood files as input and generates a VCF-form…'
Main Page
Welcome!
-2
14 November 2009
VCF
Created page with ''''VCF''' is the Variant Calling Format. For the current specification, see [http://www.1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcfv3.2 VCF format specification].'
Main Page
no edit summary
+2
Main Page
no edit summary
+278
GLF
Last Record
+14
GLF
no edit summary
+3,714
GlfSingle
no edit summary
+962
GLF
Created page with ''''GLF''' is a format for storing marginal likelihoods for next-generation sequence data, conditional on a set of possible genotypes. === Generating GLF Files === GLF files can…'
GlfSingle
Created page with ''''glfSingle''' is a GLF-based variant caller for next-generation sequencing data. It takes a GLF format genotype likelihood file as input and generates a VCF-format …'
METAL Command Reference
no edit summary
+2
METAL Command Reference
Created page with '=== Describing Input Files === SEPARATOR [WHITESPACE|COMMA|BOTH|TAB] (default = WHITESPACE) COLUMNCOUNTING [STRICT|LENIENT] (default = 'STRICT') MARK…'
Main Page
no edit summary
+1
Main Page
no edit summary
+7
Main Page
no edit summary
+2
Main Page
no edit summary
+59
File:2009.08 Group Retreat Photo.jpg
Photo from Group Retreat in August 2008.
