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Jump to navigationJump to search- 16:18, 23 March 2010 diff hist +133 N Merlin Created page with 'A program for linkage and association analysis in human pedigrees. See [http://www.sph.umich.edu/csg/abecasis/Merlin/ Merlin Website]'
- 16:17, 23 March 2010 diff hist +449 N Phred scale Created page with 'A scale commonly used to measure data quality and error rates in sequence analysis. It was popularized by Phil Green's PHRED base-calling software. It is defined as: <math> …' current
- 12:42, 23 March 2010 diff hist 0 MediaWiki:Sidebar
- 12:42, 23 March 2010 diff hist +11 MediaWiki:Sidebar
- 12:42, 23 March 2010 diff hist +2 MediaWiki:Sidebar
- 12:41, 23 March 2010 diff hist +30 MediaWiki:Sidebar
- 12:38, 23 March 2010 diff hist +17 Abecasis Lab →Staff
- 10:28, 23 March 2010 diff hist +122 Abecasis Lab →Former Research Fellows
- 10:25, 23 March 2010 diff hist +450 Abecasis Lab →Former Research Fellows
- 10:16, 23 March 2010 diff hist +698 Abecasis Lab →Former Doctoral Students
- 10:09, 23 March 2010 diff hist +188 Abecasis Lab →Former Doctoral Students
- 10:08, 23 March 2010 diff hist +27 Abecasis Lab →Former Doctoral Students
- 07:43, 23 March 2010 diff hist +382 N Biostatistics 666: The Possible Triangle Constraint Created page with '== Content == Show how simple genetic models can be used to predict similarity between relative pairs and IBD sharing among sibling pairs. Introduce the possible triangle constr…' current
- 07:15, 23 March 2010 diff hist +1 Biostatistics 666: Linkage Tests for Pairs of Individuals →Recommended Reading
- 07:15, 23 March 2010 diff hist -132 Biostatistics 666: Linkage Tests for Pairs of Individuals →Recommended Reading
- 07:15, 23 March 2010 diff hist +648 N Biostatistics 666: Linkage Tests for Pairs of Individuals Created page with '== Overview == This lecture introduces simple linkage tests in the context of affected sibling pairs. One test, originally described by Bishop and Williamson (1990) focuses on i…'
- 07:11, 23 March 2010 diff hist +172 Biostatistics 666: Main Page →Class Notes
- 07:09, 23 March 2010 diff hist +64 N File:666.16.pdf Introduces multipoint analysis, in the context of sibling pairs.
- 07:09, 23 March 2010 diff hist +135 N File:666.15.pdf Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint. current
- 07:17, 18 March 2010 diff hist +31 N MapabilityScores moved MapabilityScores to MappabilityScores current
- 07:17, 18 March 2010 diff hist 0 m MappabilityScores moved MapabilityScores to MappabilityScores current
- 07:17, 18 March 2010 diff hist 0 N File:666.14.pdf current
- 07:17, 18 March 2010 diff hist +90 Biostatistics 666: Main Page →Class Notes
- 04:37, 11 March 2010 diff hist -7 LocusZoom →Generate single plots using our publicly-available lipids GWAS data
- 04:35, 11 March 2010 diff hist -66 LocusZoom
- 04:28, 11 March 2010 diff hist -13 LocusZoom →Upload your own meta-analysis file and generate single plots using a web-based form
- 05:39, 8 March 2010 diff hist 0 ExomePicks →Download
- 04:09, 4 March 2010 diff hist +96 ExomePicks
- 04:07, 4 March 2010 diff hist 0 ExomePicks →Download
- 09:45, 3 March 2010 diff hist -1 ExomePicks →Download
- 09:45, 3 March 2010 diff hist +1 ExomePicks →Download
- 09:44, 3 March 2010 diff hist +9 ExomePicks →Download
- 09:44, 3 March 2010 diff hist +3,009 ExomePicks
- 09:28, 3 March 2010 diff hist +11 ExomePicks →Input Files
- 09:28, 3 March 2010 diff hist +2,420 N ExomePicks Created page with ''''ExomePicks''' is a program that suggests individuals to be sequenced in a large pedigree. '''ExomePicks''' assumes that a genotyping chip or another cost effective means will …'
- 03:00, 22 February 2010 diff hist +913 N Biostatistics 666: Association Tests in Structured Populations Created page with ' == Overview == This lecture introduces the problem of population stratification in the context of genetic association studies. It also discusses three possible strategies for h…'
- 02:56, 22 February 2010 diff hist +234 N File:666.13.pdf Introduces the problem of population stratification in the context of an association study. Discusses three possible solutions: a) Family based association tests. b) The genomic control method. c) Genotype based matching approaches.
- 02:54, 22 February 2010 diff hist +95 Biostatistics 666: Main Page →Class Notes
- 16:52, 19 February 2010 diff hist +1,228 N Outcomes For Mapping A Paired End Created page with '== Basics == Paired end reads have an expected relative orientation (for example, FR are expected to map to opposite strands of the genome) and distance (for example, 500 bp +/-…' current
- 08:20, 18 February 2010 diff hist +12 Biostatistics 666: Main Page →Course History
- 08:19, 18 February 2010 diff hist +940 N Biostatistics 666: Haplotype Association Tests Created page with '== Objective == This page introduces the idea of haplotype association tests. It includes a discussion of when haplotype association tests might be preferable to single marker a…'
- 08:15, 18 February 2010 diff hist +39 N File:666.12.pdf Introduces Haplotype Association Tests.
- 08:15, 18 February 2010 diff hist +79 Biostatistics 666: Main Page →Class Notes
- 02:42, 17 February 2010 diff hist -738 1000 Genomes Project Pilot 1 SNP Calling
- 02:40, 17 February 2010 diff hist -191 1000 Genomes Project Pilot 1 SNP Calling
- 17:45, 16 February 2010 diff hist -3 1000 Genomes Project Pilot 1 SNP Calling
- 23:01, 15 February 2010 diff hist -1 Biostatistics 666: Advanced Coalescent, Computation with the Coalescent →Guest Lecturer current
- 23:00, 15 February 2010 diff hist -1 Biostatistics 666: Advanced Coalescent, Changing Population Size →Guest Lecturer current
- 22:59, 15 February 2010 diff hist 0 File:666.10.pdf uploaded a new version of "File:666.10.pdf": Introduction to E-M Algorithm in Genetics. This version fixes reference to Excoffier and Slatkin paper.
- 22:58, 15 February 2010 diff hist 0 File:666.09.pdf uploaded a new version of "File:666.09.pdf": Fixed reference to Excoffier paper.