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Jump to navigationJump to search- 22:30, 18 May 2015 diff hist +3 SeqShop: May 2015
- 10:58, 25 April 2015 diff hist +243 EPACTS →VCF file for Genotypes
- 16:14, 12 December 2014 diff hist -10 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:10, 12 December 2014 diff hist +12 SeqShop: Calling Your Own Genome, December 2014 →Extracting only exonic SNPs
- 14:56, 12 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014
- 14:55, 12 December 2014 diff hist +9 SeqShop: Calling Your Own Genome, December 2014 →More SNP Analysis
- 14:54, 12 December 2014 diff hist +3,684 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 12:28, 10 December 2014 diff hist -98 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:27, 10 December 2014 diff hist +57 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:27, 10 December 2014 diff hist +13 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:26, 10 December 2014 diff hist +14 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:25, 10 December 2014 diff hist +128 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:23, 10 December 2014 diff hist +3,444 SeqShop: Analysis of Structural Variation Practical, December 2014 →Overview of GotCloud/GenomeSTRiP pipeline
- 12:21, 10 December 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 12:21, 10 December 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 10:40, 10 December 2014 diff hist -1 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 10:37, 10 December 2014 diff hist -38 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 10:36, 10 December 2014 diff hist -5 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 10:33, 10 December 2014 diff hist +16 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:32, 10 December 2014 diff hist -4 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:31, 10 December 2014 diff hist -1 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:31, 10 December 2014 diff hist +154 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:23, 10 December 2014 diff hist -179 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 10:22, 10 December 2014 diff hist -5 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 10:16, 10 December 2014 diff hist +3 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 08:43, 10 December 2014 diff hist 0 N File:Dec2014 Analysis of SV part 2.pdf current
- 08:43, 10 December 2014 diff hist +30 SeqShop: December 2014
- 02:37, 10 December 2014 diff hist -16 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 19:41, 9 December 2014 diff hist -26 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 19:39, 9 December 2014 diff hist -24 SeqShop: Analysis of Structural Variation Practical, December 2014 →Sequnce Alignment Files: BAM Files and Index Files
- 16:46, 9 December 2014 diff hist -196 SeqShop: Analysis of Structural Variation Practical, December 2014 →GotCloud Configuration File
- 16:44, 9 December 2014 diff hist -33 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:42, 9 December 2014 diff hist -524 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:40, 9 December 2014 diff hist +18 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:38, 9 December 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:38, 9 December 2014 diff hist +1,141 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:34, 9 December 2014 diff hist -25 SeqShop: Analysis of Structural Variation Practical, December 2014
- 22:11, 8 December 2014 diff hist +34 SeqShop: December 2014
- 22:10, 8 December 2014 diff hist 0 N File:Seqshop dec14 day2 snp lecture v2.pdf current
- 14:49, 27 August 2014 diff hist +1 EMMAX →= NaN in the kinship file
- 14:49, 27 August 2014 diff hist +220 EMMAX →Frequently asked Questions
- 08:15, 23 July 2014 diff hist 0 EMMAX →Effect allele
- 12:35, 11 July 2014 diff hist -6 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 12:31, 11 July 2014 diff hist -72 SeqShop: Analysis of Structural Variation Practical, June 2014 →Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
- 12:42, 10 July 2014 diff hist +89 EPACTS
- 12:41, 10 July 2014 diff hist +79 EPACTS
- 12:40, 10 July 2014 diff hist +79 EPACTS →Lastest ChangeLog
- 16:00, 19 June 2014 diff hist -1 SeqShop: Genetic Association Analysis Practical, June 2014 →Setup your run environment
- 15:31, 19 June 2014 diff hist +9 SeqShop: Genetic Association Analysis Practical, June 2014
- 12:51, 19 June 2014 diff hist 0 SeqShop: Genetic Association Analysis Practical, June 2014 →Goals of This Session
- 12:51, 19 June 2014 diff hist +2 SeqShop: Genetic Association Analysis Practical, June 2014 →Goals of This Session
- 12:51, 19 June 2014 diff hist +117 SeqShop: Genetic Association Analysis Practical, June 2014
- 12:50, 19 June 2014 diff hist 0 N File:Seqshop association practice 2014 06.pdf current
- 12:50, 19 June 2014 diff hist 0 File:Seqshop association 2014 06.pdf Hmkang uploaded a new version of "File:Seqshop association 2014 06.pdf" current
- 12:47, 19 June 2014 diff hist 0 N File:Seqshop association 2014 06.pdf
- 12:45, 19 June 2014 diff hist -300 SeqShop: Genetic Association Analysis Practical, June 2014 →Phenotype Information
- 12:44, 19 June 2014 diff hist +43 SeqShop: Genetic Association Analysis Practical, June 2014 →Setup your run environment
- 12:43, 19 June 2014 diff hist +3,991 SeqShop: Genetic Association Analysis Practical, June 2014
- 12:34, 19 June 2014 diff hist 0 N File:Single.zoom.22.36995620.png current
- 12:33, 19 June 2014 diff hist 0 N File:Single.epacts.mh.png current
- 12:33, 19 June 2014 diff hist 0 N File:Single.epacts.qq.png
- 12:33, 19 June 2014 diff hist 0 N File:Emmax.epacts.qq.pdf current
- 12:23, 19 June 2014 diff hist +433 SeqShop: Genetic Association Analysis Practical, June 2014
- 02:51, 19 June 2014 diff hist +536 SeqShop: Genetic Association Analysis Practical, June 2014 →Annotating Variants with EPACTS
- 02:18, 19 June 2014 diff hist +1,777 SeqShop: Genetic Association Analysis Practical, June 2014 →Annotating Variants with EPACTS
- 02:08, 19 June 2014 diff hist +10,800 N SeqShop: Genetic Association Analysis Practical, June 2014 Created page with "(''WARNING: Under Construction'') == Goals of This Session == * Understand how to annotate variants using EPACTS * Understand how to run single variant association analysis u..."
- 00:02, 19 June 2014 diff hist 0 EPACTS
- 01:43, 18 June 2014 diff hist 0 File:Seqshop cnv partb 2014 06.pdf Hmkang uploaded a new version of "File:Seqshop cnv partb 2014 06.pdf" current
- 01:39, 18 June 2014 diff hist 0 File:Seqshop cnv partb 2014 06.pdf Hmkang uploaded a new version of "File:Seqshop cnv partb 2014 06.pdf"
- 01:37, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014 →Goals of This Session
- 01:37, 18 June 2014 diff hist -2 SeqShop: Analysis of Structural Variation Practical, June 2014 →Goals of This Session
- 01:36, 18 June 2014 diff hist +102 SeqShop: Analysis of Structural Variation Practical, June 2014 →Goals of This Session
- 01:35, 18 June 2014 diff hist 0 N File:Seqshop cnv partb 2014 06.pdf
- 01:29, 18 June 2014 diff hist -35 SeqShop: Analysis of Structural Variation Practical, June 2014
- 01:28, 18 June 2014 diff hist -2 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 01:22, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 01:22, 18 June 2014 diff hist +10 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 01:20, 18 June 2014 diff hist +134 SeqShop: Analysis of Structural Variation Practical, June 2014 →Why use GenomeSTRiP?
- 01:18, 18 June 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, June 2014 →Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
- 01:17, 18 June 2014 diff hist -7 SeqShop: Analysis of Structural Variation Practical, June 2014 →Sequnce Alignment Files: BAM Files and Index Files
- 01:17, 18 June 2014 diff hist +48 SeqShop: Analysis of Structural Variation Practical, June 2014 →Sequnce Alignment Files: BAM Files and Index Files
- 01:15, 18 June 2014 diff hist +147 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 01:13, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014
- 01:12, 18 June 2014 diff hist -8,894 SeqShop: Analysis of Structural Variation Practical, June 2014
- 01:12, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014 →What does a real SV look like?
- 01:11, 18 June 2014 diff hist +1,988 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 01:08, 18 June 2014 diff hist 0 N File:Genomestrip thirdparty screenshot.png current
- 00:58, 18 June 2014 diff hist 0 N File:Genomestrip genotype screenshot.png current
- 00:55, 18 June 2014 diff hist 0 N File:Igvsvexample.png current
- 00:14, 18 June 2014 diff hist +699 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:13, 18 June 2014 diff hist 0 N File:Genomestrip filter description.png current
- 00:07, 18 June 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:07, 18 June 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:06, 18 June 2014 diff hist +132 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:05, 18 June 2014 diff hist +713 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 00:03, 18 June 2014 diff hist -1 SeqShop: Analysis of Structural Variation Practical, June 2014 →Overview of GotCloud/GenomeSTRiP pipeline
- 00:02, 18 June 2014 diff hist +346 SeqShop: Analysis of Structural Variation Practical, June 2014 →Setup your run environment
- 23:56, 17 June 2014 diff hist +53 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 23:55, 17 June 2014 diff hist 0 N File:Genomestrip discovery screenshot.png current
- 23:53, 17 June 2014 diff hist +26 SeqShop: Analysis of Structural Variation Practical, June 2014 →Setup your run environment