SeqShop: December 2014

Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/

Workshop Schedule: SeqShopScheduleDec2014.pdf

Monday	Lecture	Practical	Own Genome Analysis
	Brief Introduction and Background	SeqShop: Practical Intro	SeqShop: Aligning Your Own Genome
	Design of Human Genetic Studies
	Sequence Mapping and Assembly	SeqShop: Sequence Mapping and Assembly Practical Live experimentation with IOBIO
Tuesday	Lecture	Practical	Own Genome Analysis
	Variant Calling and Filtering for SNPs	SeqShop: Variant Calling and Filtering for SNPs Practical	SeqShop: Calling Your Own Genome
	Variant Calling and Filtering for INDELs	SeqShop: Variant Calling and Filtering for INDELs Practical
Wednesday	Lecture	Practical	Own Genome Analysis
	Analysis of Structural Variation - Part 1 Analysis of Structural Variation - Part 2	SeqShop: Analysis of Structural Variation Practical	SeqShop: Calling Your Own Genome
Thursday	Lecture	Practical	Own Genome Analysis
	Estimates of Genetic Ancestry	SeqShop: Estimates of Genetic Ancestry Practical	SeqShop: Calling Your Own Genome
	Genetic Association Analysis
Friday	Lecture	Practical	Own Genome Analysis
		SeqShop: Genetic Association Analysis Practical	SeqShop: Ancestry On Your Own Genome SeqShop: Calling Your Own Genome
	Example of a Whole Genome Association Study