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Jump to navigationJump to search- 14:41, 10 June 2010 diff hist -9,068 C++ Class: SamFile
- 14:41, 10 June 2010 diff hist -12 Sam Library Usage Examples
- 14:40, 10 June 2010 diff hist +9,098 N Sam Library Usage Examples Created page with '==== Simple Read/Write SAM/BAM files ==== The following example reads in a sam/bam file and writes it out as a sam/bam file. The file format of the input sam/bam is determined b…'
- 14:39, 10 June 2010 diff hist +54 LibStatGen: BAM
- 17:03, 9 June 2010 diff hist +730 C++ Class: SamFileHeader
- 17:29, 7 June 2010 diff hist +1,913 N BAM Review Action Items Created page with '* Move the examples from the SamFile wiki page to their own page ** include links from the main library page and the SamFile page. ** look into why the one example have two if ch…'
- 17:21, 7 June 2010 diff hist +29 LibStatGen: BAM
- 12:13, 7 June 2010 diff hist -1 LibStatGen: BAM →Read & Write BAM/SAM Library
- 08:24, 4 June 2010 diff hist +63 m LibStatGen: BAM →Suggested Improvements/Features
- 10:11, 3 June 2010 diff hist -1 C++ Class: SamRecord
- 10:10, 3 June 2010 diff hist +351 C++ Class: SamRecord
- 19:02, 2 June 2010 diff hist +318 C++ Library: FASTQ Change Log
- 18:59, 2 June 2010 diff hist +14 FastQValidator
- 18:58, 2 June 2010 diff hist +28 FastQValidator →Optional Parameters
- 18:58, 2 June 2010 diff hist +81 FastQValidator
- 18:04, 1 June 2010 diff hist +38 FastQValidator
- 18:00, 1 June 2010 diff hist +4 BamUtil
- 18:00, 1 June 2010 diff hist +43 BamUtil
- 17:57, 1 June 2010 diff hist +21 C++ Class: SamRecord
- 17:56, 1 June 2010 diff hist +21 C++ Class: SamFileHeader
- 17:56, 1 June 2010 diff hist -9 LibStatGen: BAM
- 17:55, 1 June 2010 diff hist +21 C++ Class: SamFile
- 17:22, 1 June 2010 diff hist +7 LibStatGen: BAM
- 17:21, 1 June 2010 diff hist +23 LibStatGen: BAM
- 17:24, 24 May 2010 diff hist +604 SAM Validation Criteria
- 13:04, 21 May 2010 diff hist +345 SAM Validation Criteria
- 12:44, 21 May 2010 diff hist +21 BamUtil
- 12:43, 21 May 2010 diff hist +708 BamUtil
- 13:02, 20 May 2010 diff hist +112 C++ Class: InputFile
- 11:54, 20 May 2010 diff hist +506 C++ Class: InputFile
- 11:49, 20 May 2010 diff hist +956 C++ Class: InputFile
- 11:43, 20 May 2010 diff hist +404 C++ Library: general Change Log
- 18:12, 19 May 2010 diff hist +88 SAM Validation Criteria
- 14:47, 19 May 2010 diff hist +14 SAM Validation Criteria
- 13:44, 19 May 2010 diff hist +5 SAM Validation Criteria
- 13:35, 19 May 2010 diff hist +289 SAM Validation Criteria
- 13:24, 19 May 2010 diff hist +498 SAM Validation Criteria
- 12:41, 19 May 2010 diff hist +41 SAM Validation Criteria
- 12:40, 19 May 2010 diff hist +4 SAM Validation Criteria
- 11:52, 19 May 2010 diff hist +24 C++ Class: CigarRoller
- 10:37, 19 May 2010 diff hist +58 SAM Validation Criteria
- 10:35, 19 May 2010 diff hist +2 C++ Class: SamRecord
- 12:21, 18 May 2010 diff hist +73 BamUtil
- 12:21, 18 May 2010 diff hist -73 C++ Class: SamRecord
- 18:06, 14 May 2010 diff hist +2,532 C++ Class: CigarRoller
- 14:55, 13 May 2010 diff hist -2 C++ Class: CigarRoller
- 14:44, 13 May 2010 diff hist +3,925 N C++ Class: CigarRoller Created page with '= CigarRoller= This class is part of libcsg. This purpose of this class is to provide utilities for creating and processing CIGAR strings. == Public Met…'
- 12:58, 13 May 2010 diff hist +114 LibStatGen: general
- 12:56, 13 May 2010 diff hist +27 C++ Library: general Change Log
- 12:56, 13 May 2010 diff hist +365 C++ Library: general Change Log
- 18:01, 11 May 2010 diff hist +67 BamUtil
- 17:59, 11 May 2010 diff hist +1,301 BamUtil
- 17:53, 11 May 2010 diff hist +160 LibStatGen: BAM
- 17:52, 11 May 2010 diff hist +226 LibStatGen: BAM →Classes in the BAM/SAM Library
- 17:22, 11 May 2010 diff hist +88 LibStatGen: BAM →Classes in the BAM/SAM Library
- 17:19, 11 May 2010 diff hist +271 C++ Class: SamRecord
- 16:22, 11 May 2010 diff hist +71 LibStatGen: BAM
- 16:20, 11 May 2010 diff hist +510 C++ Class: SamFileHeader
- 16:06, 11 May 2010 diff hist +11 C++ Class: SamFile
- 16:05, 11 May 2010 diff hist +4,004 C++ Class: SamFile
- 14:57, 11 May 2010 diff hist +1,105 C++ Class: SamFile
- 10:52, 11 May 2010 diff hist +259 C++ Class: SamFile
- 13:56, 7 May 2010 diff hist -17 SAM Validation Criteria
- 13:33, 7 May 2010 diff hist +10 SAM Validation Criteria
- 13:34, 6 May 2010 diff hist +298 C++ Class: FastQFile
- 13:31, 6 May 2010 diff hist +35 C++ Library: FASTQ Change Log
- 13:30, 6 May 2010 diff hist +284 C++ Library: FASTQ Change Log
- 17:48, 3 May 2010 diff hist +240 C++ Library: general Change Log
- 17:27, 3 May 2010 diff hist +990 N C++ Class: InputFile Created page with '= InputFile / IFILE = This is our class for file operations. It hides the underlying file structure from the user. That way code can generically open and operate on a file usin…'
- 16:43, 3 May 2010 diff hist +2 LibStatGen: general
- 16:43, 3 May 2010 diff hist +392 LibStatGen: general
- 12:14, 3 May 2010 diff hist +101 C++ Class: SamRecord
- 10:27, 3 May 2010 diff hist +596 C++ Class: SamRecord
- 16:34, 30 April 2010 diff hist +102 C++ Library: FASTQ Change Log
- 17:53, 28 April 2010 diff hist +20 SAM Validation Criteria →BamFile Classes
- 16:33, 28 April 2010 diff hist 0 Main Page →Sequence Analysis Tools
- 16:33, 28 April 2010 diff hist +31 Main Page →Sequence Analysis Tools
- 16:31, 28 April 2010 diff hist +136 C++ Class: SamRecord →Retrieving fields from a SAM/BAM Record
- 19:27, 20 April 2010 diff hist -1 LibStatGen: BAM
- 19:26, 20 April 2010 diff hist +139 LibStatGen: BAM
- 19:09, 20 April 2010 diff hist +5,621 C++ Class: SamFileHeader
- 18:41, 20 April 2010 diff hist +4,875 C++ Class: SamFileHeader
- 18:30, 16 April 2010 diff hist +449 SAM Validation Criteria
- 10:35, 15 April 2010 diff hist +139 C++ Library: FASTQ Change Log
- 10:33, 15 April 2010 diff hist +31 FastQValidator →Optional Space Options for Raw Sequence (Last one specified is used)
- 10:32, 15 April 2010 diff hist +4 FastQ Validation Criteria
- 10:32, 15 April 2010 diff hist +57 FastQ Validation Criteria
- 10:31, 15 April 2010 diff hist -54 FastQValidator
- 10:30, 15 April 2010 diff hist -1 FastQ Validation Criteria
- 10:29, 15 April 2010 diff hist +201 FastQ Validation Criteria
- 10:26, 15 April 2010 diff hist -3,234 C++ Class: FastQFile
- 10:26, 15 April 2010 diff hist +3,303 N FastQ Validation Criteria Created page with '== FastQ Sequence Validation Criteria == {| class="wikitable" style="width:100%" |+ style="font-size:150%" |'''Sequence Identifier Line''' ! width="50%"|Validation Criteria ! …'
- 10:24, 15 April 2010 diff hist +90 FastQValidator
- 12:43, 13 April 2010 diff hist +45 SAM Validation Criteria →Other Read Validation
- 09:48, 13 April 2010 diff hist +157 C++ Class: SamFileHeader →Proposed Accessors
- 18:58, 12 April 2010 diff hist +505 C++ Class: SamFileHeader
- 18:13, 12 April 2010 diff hist +344 C++ Library: FASTQ Change Log
- 16:06, 12 April 2010 diff hist -18 C++ Class: SamRecord
- 17:50, 7 April 2010 diff hist +631 C++ Library: FASTQ Change Log
- 10:42, 7 April 2010 diff hist +290 FastQValidator