User contributions
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Jump to navigationJump to search- 18:01, 11 May 2010 diff hist +67 BamUtil
- 17:59, 11 May 2010 diff hist +1,301 BamUtil
- 17:53, 11 May 2010 diff hist +160 LibStatGen: BAM
- 17:52, 11 May 2010 diff hist +226 LibStatGen: BAM →Classes in the BAM/SAM Library
- 17:22, 11 May 2010 diff hist +88 LibStatGen: BAM →Classes in the BAM/SAM Library
- 17:19, 11 May 2010 diff hist +271 C++ Class: SamRecord
- 16:22, 11 May 2010 diff hist +71 LibStatGen: BAM
- 16:20, 11 May 2010 diff hist +510 C++ Class: SamFileHeader
- 16:06, 11 May 2010 diff hist +11 C++ Class: SamFile
- 16:05, 11 May 2010 diff hist +4,004 C++ Class: SamFile
- 14:57, 11 May 2010 diff hist +1,105 C++ Class: SamFile
- 10:52, 11 May 2010 diff hist +259 C++ Class: SamFile
- 13:56, 7 May 2010 diff hist -17 SAM Validation Criteria
- 13:33, 7 May 2010 diff hist +10 SAM Validation Criteria
- 13:34, 6 May 2010 diff hist +298 C++ Class: FastQFile
- 13:31, 6 May 2010 diff hist +35 C++ Library: FASTQ Change Log
- 13:30, 6 May 2010 diff hist +284 C++ Library: FASTQ Change Log
- 17:48, 3 May 2010 diff hist +240 C++ Library: general Change Log
- 17:27, 3 May 2010 diff hist +990 N C++ Class: InputFile Created page with '= InputFile / IFILE = This is our class for file operations. It hides the underlying file structure from the user. That way code can generically open and operate on a file usin…'
- 16:43, 3 May 2010 diff hist +2 LibStatGen: general
- 16:43, 3 May 2010 diff hist +392 LibStatGen: general
- 12:14, 3 May 2010 diff hist +101 C++ Class: SamRecord
- 10:27, 3 May 2010 diff hist +596 C++ Class: SamRecord
- 16:34, 30 April 2010 diff hist +102 C++ Library: FASTQ Change Log
- 17:53, 28 April 2010 diff hist +20 SAM Validation Criteria →BamFile Classes
- 16:33, 28 April 2010 diff hist 0 Main Page →Sequence Analysis Tools
- 16:33, 28 April 2010 diff hist +31 Main Page →Sequence Analysis Tools
- 16:31, 28 April 2010 diff hist +136 C++ Class: SamRecord →Retrieving fields from a SAM/BAM Record
- 19:27, 20 April 2010 diff hist -1 LibStatGen: BAM
- 19:26, 20 April 2010 diff hist +139 LibStatGen: BAM
- 19:09, 20 April 2010 diff hist +5,621 C++ Class: SamFileHeader
- 18:41, 20 April 2010 diff hist +4,875 C++ Class: SamFileHeader
- 18:30, 16 April 2010 diff hist +449 SAM Validation Criteria
- 10:35, 15 April 2010 diff hist +139 C++ Library: FASTQ Change Log
- 10:33, 15 April 2010 diff hist +31 FastQValidator →Optional Space Options for Raw Sequence (Last one specified is used)
- 10:32, 15 April 2010 diff hist +4 FastQ Validation Criteria
- 10:32, 15 April 2010 diff hist +57 FastQ Validation Criteria
- 10:31, 15 April 2010 diff hist -54 FastQValidator
- 10:30, 15 April 2010 diff hist -1 FastQ Validation Criteria
- 10:29, 15 April 2010 diff hist +201 FastQ Validation Criteria
- 10:26, 15 April 2010 diff hist -3,234 C++ Class: FastQFile
- 10:26, 15 April 2010 diff hist +3,303 N FastQ Validation Criteria Created page with '== FastQ Sequence Validation Criteria == {| class="wikitable" style="width:100%" |+ style="font-size:150%" |'''Sequence Identifier Line''' ! width="50%"|Validation Criteria ! …'
- 10:24, 15 April 2010 diff hist +90 FastQValidator
- 12:43, 13 April 2010 diff hist +45 SAM Validation Criteria →Other Read Validation
- 09:48, 13 April 2010 diff hist +157 C++ Class: SamFileHeader →Proposed Accessors
- 18:58, 12 April 2010 diff hist +505 C++ Class: SamFileHeader
- 18:13, 12 April 2010 diff hist +344 C++ Library: FASTQ Change Log
- 16:06, 12 April 2010 diff hist -18 C++ Class: SamRecord
- 17:50, 7 April 2010 diff hist +631 C++ Library: FASTQ Change Log
- 10:42, 7 April 2010 diff hist +290 FastQValidator
- 20:07, 6 April 2010 diff hist +55 C++ Class: SamRecord
- 20:06, 6 April 2010 diff hist +55 C++ Class: SamFileHeader
- 20:06, 6 April 2010 diff hist +54 C++ Class: SamFile
- 20:03, 6 April 2010 diff hist -29 C++ Class: SamFile
- 19:57, 6 April 2010 diff hist +136 LibStatGen: BAM
- 19:51, 6 April 2010 diff hist +70 Main Page
- 19:50, 6 April 2010 diff hist +49 N Talk:FastQ Validator moved Talk:FastQ Validator to Talk:C++ Executable: fastQValidator current
- 19:50, 6 April 2010 diff hist 0 m Talk:FastQValidator moved Talk:FastQ Validator to Talk:C++ Executable: fastQValidator
- 19:50, 6 April 2010 diff hist +44 N FastQ Validator moved FastQ Validator to C++ Executable: fastQValidator current
- 19:50, 6 April 2010 diff hist 0 m FastQValidator moved FastQ Validator to C++ Executable: fastQValidator
- 18:35, 6 April 2010 diff hist 0 C++ Library: general Change Log
- 18:35, 6 April 2010 diff hist +278 C++ Library: general Change Log
- 18:34, 6 April 2010 diff hist +304 N C++ Library: FASTQ Change Log Created page with '=libfqf Change Log = This page tracks the updates/enhancements that have been updated in the git repository. It is primarily used to track the user interface changes, so users c…'
- 18:31, 6 April 2010 diff hist +52 C++ Class: FastQFile
- 18:12, 6 April 2010 diff hist -10,036 LibStatGen: FASTQ
- 18:12, 6 April 2010 diff hist +28 LibStatGen: general →Classes in the FastQFile Library
- 18:11, 6 April 2010 diff hist +10,283 C++ Class: FastQFile
- 17:40, 6 April 2010 diff hist +950 N C++ Class: FastQFile Created page with '== Reading/Validating FastQ Files In Your Program == The '''FastQFile''' class allows a user to easily read/validate a fastq file. === Class Methods === {| style="margin: 1em 1…'
- 17:34, 6 April 2010 diff hist +141 LibStatGen: FASTQ
- 17:33, 6 April 2010 diff hist +404 LibStatGen: FASTQ
- 17:32, 6 April 2010 diff hist +749 N LibStatGen: general Created page with '= libcsg = This library contains utility classes that are useful for many of the other developed software programs/libraries. See C++ Library: libcsg Change Log for a list o…'
- 17:20, 6 April 2010 diff hist +33 N FastQFile moved FastQFile to C++ Library: libfqf current
- 17:20, 6 April 2010 diff hist 0 m LibStatGen: FASTQ moved FastQFile to C++ Library: libfqf
- 17:20, 6 April 2010 diff hist +3 LibStatGen: BAM
- 17:19, 6 April 2010 diff hist +33 N C++ Library: bam moved C++ Library: bam to C++ Library: libbam current
- 17:19, 6 April 2010 diff hist 0 m LibStatGen: BAM moved C++ Library: bam to C++ Library: libbam
- 17:10, 6 April 2010 diff hist +847 BamUtil
- 17:09, 6 April 2010 diff hist -584 LibStatGen: BAM
- 17:02, 6 April 2010 diff hist +5 LibStatGen: BAM
- 16:56, 6 April 2010 diff hist +391 LibStatGen: BAM
- 16:42, 6 April 2010 diff hist +30 N BamFile moved BamFile to C++ Library: bam current
- 16:42, 6 April 2010 diff hist 0 m LibStatGen: BAM moved BamFile to C++ Library: bam
- 16:41, 6 April 2010 diff hist +60 C++ Class: SamFileHeader
- 16:41, 6 April 2010 diff hist +528 C++ Class: SamRecord
- 16:23, 6 April 2010 diff hist +53 C++ Class: SamFile
- 16:20, 6 April 2010 diff hist -1,444 C++ Class: SamFile
- 13:43, 6 April 2010 diff hist +606 BamUtil
- 11:58, 6 April 2010 diff hist +111 BamUtil
- 11:57, 6 April 2010 diff hist +661 BamUtil
- 11:50, 6 April 2010 diff hist +425 N BamUtil Created page with '= bam Executable = The bam executable has the following functions. * Read and Validate a SAM/BAM file * Read a SAM/BAM fi…'
- 11:27, 6 April 2010 diff hist +687 C++ Class: SamFile →Class Methods
- 11:13, 6 April 2010 diff hist +495 C++ Class: SamRecord
- 11:10, 6 April 2010 diff hist +9,448 N C++ Class: SamRecord Created page with '== Setting fields in a SAM/BAM Record == The '''SamRecord''' class contains accessors to set the fields of a SAM/BAM record. They are used for creating a record that is not read…'
- 11:10, 6 April 2010 diff hist -9,183 LibStatGen: BAM
- 11:06, 6 April 2010 diff hist +2,135 N C++ Class: SamFileHeader Created page with '== SamFileHeader == This class allows a user to get/set the fields in a SAM/BAM Header. === Setting fields in the Header === The '''SamFileHeader''' class contains accessors to …'
- 11:03, 6 April 2010 diff hist -1,282 LibStatGen: BAM
- 10:56, 6 April 2010 diff hist +573 C++ Class: SamFile
- 10:48, 6 April 2010 diff hist +470 C++ Class: SamFile
- 10:41, 6 April 2010 diff hist +726 C++ Class: SamFile →Usage Example
- 10:09, 6 April 2010 diff hist -2 C++ Class: SamFile →Usage Example