User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 02:05, 2 November 2010 diff hist +28 BamUtil: validate
- 02:04, 2 November 2010 diff hist -349 BamUtil: validate
- 02:03, 2 November 2010 diff hist +347 Software
- 02:00, 2 November 2010 diff hist +54 C++ Class: CigarRoller
- 01:59, 2 November 2010 diff hist 0 N File:StatGen 0.1.0.tgz current
- 01:58, 2 November 2010 diff hist +58 C++ Class: InputFile
- 01:56, 2 November 2010 diff hist +52 N Category:LibStatGen general Created page with 'part of the general directory of the statgen library' current
- 01:56, 2 November 2010 diff hist +57 C++ Library: general Change Log
- 01:56, 2 November 2010 diff hist +52 C++ Library: general Change Log
- 01:55, 2 November 2010 diff hist +45 N C++ Library: libcsg Change Log moved C++ Library: libcsg Change Log to C++ Library: general Change Log current
- 01:55, 2 November 2010 diff hist 0 m C++ Library: general Change Log moved C++ Library: libcsg Change Log to C++ Library: general Change Log
- 01:55, 2 November 2010 diff hist +76 LibStatGen: general
- 01:53, 2 November 2010 diff hist +37 N C++ Library: libcsg moved C++ Library: libcsg to StatGenLibrary: general current
- 01:53, 2 November 2010 diff hist 0 m LibStatGen: general moved C++ Library: libcsg to StatGenLibrary: general
- 01:50, 2 November 2010 diff hist +68 C++ Class: SamRecord
- 01:50, 2 November 2010 diff hist +68 C++ Class: SamFileHeader
- 01:49, 2 November 2010 diff hist +92 C++ Class: SamFile
- 01:48, 2 November 2010 diff hist +53 Sam Library Usage Examples
- 01:48, 2 November 2010 diff hist +53 SAM/BAM Classes FAQs
- 01:47, 2 November 2010 diff hist +53 BAM Review Action Items
- 01:46, 2 November 2010 diff hist +47 N Category:LibStatGen BAM Created page with 'Part of the BAM portion of the statGen library.' current
- 01:45, 2 November 2010 diff hist +34 N SAM/BAM Library FAQs moved SAM/BAM Library FAQs to SAM/BAM Classes FAQs current
- 01:45, 2 November 2010 diff hist 0 m SAM/BAM Classes FAQs moved SAM/BAM Library FAQs to SAM/BAM Classes FAQs
- 01:44, 2 November 2010 diff hist +27 LibStatGen: BAM
- 01:44, 2 November 2010 diff hist +47 N Category:LibStatGen FASTQ Created page with 'Part of the FASTQ folder of the StatGen Library' current
- 01:43, 2 November 2010 diff hist +94 C++ Class: FastQFile
- 01:43, 2 November 2010 diff hist +55 C++ Library: FASTQ Change Log
- 01:43, 2 November 2010 diff hist +34 N Category:LibStatGen Created page with 'These pages are part of libStatGen' current
- 01:42, 2 November 2010 diff hist +64 C++ Library: libStatGen
- 01:42, 2 November 2010 diff hist +94 LibStatGen: FASTQ
- 01:40, 2 November 2010 diff hist -26 FastQValidator
- 01:34, 2 November 2010 diff hist -361 LibStatGen: BAM
- 01:32, 2 November 2010 diff hist +2 C++ Library: FASTQ Change Log
- 01:32, 2 November 2010 diff hist +50 C++ Library: FASTQ Change Log
- 01:31, 2 November 2010 diff hist -3 LibStatGen: FASTQ →Library Output
- 01:31, 2 November 2010 diff hist +11 LibStatGen: FASTQ
- 01:18, 2 November 2010 diff hist +20 LibStatGen: FASTQ
- 01:17, 2 November 2010 diff hist +43 N C++ Library: libfqf Change Log moved C++ Library: libfqf Change Log to C++ Library: FASTQ Change Log current
- 01:17, 2 November 2010 diff hist 0 m C++ Library: FASTQ Change Log moved C++ Library: libfqf Change Log to C++ Library: FASTQ Change Log
- 01:14, 2 November 2010 diff hist -1 LibStatGen: FASTQ →FastQValidator
- 01:13, 2 November 2010 diff hist -319 LibStatGen: FASTQ
- 01:11, 2 November 2010 diff hist +2,517 Software
- 00:35, 2 November 2010 diff hist +53 VcfGenomeStat current
- 00:19, 2 November 2010 diff hist +1,040 N VcfGenomeStat Created page with '== Purpose == vcfGenomeStat - print flanking sequences and how often they appear for input vcf file. == Usage == <pre> ../bin/vcfGenomeStat [-L <integer>] [-w <integer>] [-l…'
- 18:47, 1 November 2010 diff hist 0 BamUtil: splitBam
- 18:44, 1 November 2010 diff hist +32 BamUtil: splitBam
- 18:39, 1 November 2010 diff hist +876 N BamUtil: splitBam Created page with '== SplitBam == Split a BAM file into multiple BAM files based on ReadGroup according to the following details. # Creates multiple output files named [outprefix].[RGID].bam, for e…'
- 18:37, 1 November 2010 diff hist +79 BamUtil: mergeBam
- 18:31, 1 November 2010 diff hist +4 BamUtil: mergeBam
- 18:30, 1 November 2010 diff hist -4 BamUtil: mergeBam
- 18:29, 1 November 2010 diff hist +10 BamUtil: mergeBam
- 18:29, 1 November 2010 diff hist -65 BamUtil: mergeBam
- 18:29, 1 November 2010 diff hist +359 BamUtil: mergeBam
- 18:05, 1 November 2010 diff hist -1 BamUtil: mergeBam
- 17:42, 1 November 2010 diff hist +70 BamUtil: mergeBam
- 17:40, 1 November 2010 diff hist +796 N BamUtil: mergeBam Created page with ' rgMergeBam merges multiple sorted BAM files into one BAM file like 'samtools merge' command, but merges BAM headers. * Checks that the HD and SQ tags are identical across the BA…'
- 17:34, 1 November 2010 diff hist +2,840 N Pileup Created page with ' Features: # Option to include a VCF file to select chromosome locations of interest #* Input VCF file can be gzipped or plain text. #*The output VCF file when an input VCF file …'
- 16:21, 1 November 2010 diff hist +3,542 BamUtil: polishBam
- 15:21, 29 October 2010 diff hist -56 BamUtil: polishBam
- 14:47, 29 October 2010 diff hist -52 BamUtil: polishBam
- 14:46, 29 October 2010 diff hist +379 BamUtil: polishBam
- 14:42, 29 October 2010 diff hist +917 N BamUtil: polishBam Created page with '== Trim BAM == The <code>trimBam</code> program is released as part of the StatGen Library & Tools download. <code>trimBam</code> trims the end of reads in a SAM/BAM file, chang…'
- 14:40, 29 October 2010 diff hist +40 N Category:BAM Software Created page with 'Software tools that work with BAM files.'
- 14:40, 29 October 2010 diff hist +26 BamUtil: trimBam
- 14:40, 29 October 2010 diff hist +86 N Category:StatGen Download Created page with 'These are the tools and library classes that are downloaded with the statgen download.' current
- 14:39, 29 October 2010 diff hist +24 BamUtil: trimBam
- 14:38, 29 October 2010 diff hist +867 N BamUtil: trimBam Created page with '== Trim BAM == The <code>trimBam</code> program is released as part of the StatGen Library & Tools download. <code>trimBam</code> trims the end of reads in a SAM/BAM file, chang…'
- 13:33, 29 October 2010 diff hist 0 C++ Library: libStatGen
- 13:33, 29 October 2010 diff hist +843 C++ Library: libStatGen
- 19:10, 25 October 2010 diff hist +42 N C++ Library: libStatGen Created page with 'To use the StatGenLibrary, first download:'
- 12:02, 25 October 2010 diff hist +207 FastQValidator
- 11:47, 25 October 2010 diff hist +35 N C++ Library: libfqf moved C++ Library: libfqf to StatGenLibrary: FASTQ current
- 11:47, 25 October 2010 diff hist 0 m LibStatGen: FASTQ moved C++ Library: libfqf to StatGenLibrary: FASTQ
- 11:42, 25 October 2010 diff hist +33 N C++ Library: libbam moved C++ Library: libbam to StatGenLibrary: BAM current
- 11:42, 25 October 2010 diff hist 0 m LibStatGen: BAM moved C++ Library: libbam to StatGenLibrary: BAM
- 13:01, 13 October 2010 diff hist -136 BamUtil: filter
- 13:00, 13 October 2010 diff hist -643 BamUtil
- 12:58, 13 October 2010 diff hist -721 BamUtil: validate
- 12:57, 13 October 2010 diff hist +520 BamUtil
- 12:15, 11 October 2010 diff hist -1 C++ Class: CigarRoller →Cigar
- 11:58, 8 October 2010 diff hist -3,136 Sam Library Usage Examples
- 17:29, 30 September 2010 diff hist +2,583 BamUtil: filter
- 17:11, 30 September 2010 diff hist +1,364 BamUtil: filter
- 16:30, 30 September 2010 diff hist +129 BamUtil: filter
- 16:29, 30 September 2010 diff hist +575 BamUtil: filter
- 16:24, 30 September 2010 diff hist +698 BamUtil: filter
- 15:58, 30 September 2010 diff hist +408 BamUtil: filter
- 15:55, 30 September 2010 diff hist +637 BamUtil: filter
- 15:51, 30 September 2010 diff hist +1,175 BamUtil: filter
- 15:18, 30 September 2010 diff hist +1,247 N BamUtil: filter Created page with 'Category:libbam == filter == The <code>filter</code> option on the bam executable writes the alignments filtering them by clipping ends with too high of a mismatch …'
- 15:15, 30 September 2010 diff hist +585 BamUtil
- 15:05, 30 September 2010 diff hist +271 BamUtil
- 15:01, 30 September 2010 diff hist +1,033 BamUtil
- 11:34, 30 September 2010 diff hist +100 BamUtil
- 18:52, 29 September 2010 diff hist +39 LibStatGen: BAM
- 18:44, 29 September 2010 diff hist +147 N Category:C++ Created page with 'If you create a page for C++ software, add <pre>Category:C++</pre> to the bottom of the page so that it will automatically be included here.' current
- 18:37, 29 September 2010 diff hist +129 C++ Class: CigarRoller →Public Methods
- 18:36, 29 September 2010 diff hist +11 C++ Class: CigarRoller →Public Methods
- 18:35, 29 September 2010 diff hist +135 C++ Class: CigarRoller →Public Methods
- 18:08, 29 September 2010 diff hist +14 C++ Class: CigarRoller →static Methods