User contributions
11 February 2015
10 February 2015
GotCloud: GenomeSTRiP Pipeline
Configuration File
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GotCloud: GenomeSTRiP Pipeline
Analysis Region Options
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GotCloud: GenomeSTRiP Pipeline
Running GotCloud/GenomeSTRiP
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GotCloud: GenomeSTRiP Pipeline
BAM List File
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GotCloud: Variant Calling Pipeline
BAM List File
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GotCloud: Variant Calling Pipeline
BAM List File
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GotCloud: GenomeSTRiP Pipeline
Input Data
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GotCloud: GenomeSTRiP Pipeline
Running GotCloud/GenomeSTRiP
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GotCloud: GenomeSTRiP Pipeline
Running GotCloud/GenomeSTRiP
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GotCloud: GenomeSTRiP Pipeline
Genotyping Pipeline
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GotCloud: GenomeSTRiP Pipeline
Discovery Pipeline
+50
GotCloud: GenomeSTRiP Pipeline
Running GotCloud/GenomeSTRiP
+886
GotCloud: GenomeSTRiP Pipeline
Metadata Pipeline
+1
9 February 2015
GotCloud: GenomeSTRiP Pipeline
no edit summary
+1,592
GotCloud: GenomeSTRiP Pipeline
Created page with "Back to parent: GotCloud == GenomeSTRiP == GenomeSTRiP was developed at the Broad Institute and at the McCarroll Lab at the Harvard Medical School Department of Genetics:..."
6 February 2015
19 January 2015
13 January 2015
7 January 2015
5 January 2015
18 December 2014
17 December 2014
SeqShop: Sequence Mapping and Assembly Practical, December 2014
Setup when running on your own outside of the SeqShop Workshop
+22
SeqShop: Genetic Association Analysis Practical, December 2014
Run Groupwise Test
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SeqShop: Genetic Association Analysis Practical, December 2014
Run Groupwise Test
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SeqShop: Genetic Association Analysis Practical, December 2014
Run Groupwise Test
-1
File:Single.epacts.qq.png
Mktrost uploaded a new version of "File:Single.epacts.qq.png"
SeqShop: Genetic Association Analysis Practical, December 2014
Single Variant Association Analysis
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SeqShop: Genetic Association Analysis Practical, December 2014
no edit summary
SeqShop: Genetic Association Analysis Practical, December 2014
Return to Ancestry on your own genome
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SeqShop: Genetic Association Analysis Practical, December 2014
Introduction
+53
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Setup when running on your own outside of the SeqShop Workshop
+18
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Setup when running on your own outside of the SeqShop Workshop
+66
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Setup when running on your own outside of the SeqShop Workshop
-2
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Setup when running on your own outside of the SeqShop Workshop
+64
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Setup when running on your own outside of the SeqShop Workshop
-64
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Setup when running on your own outside of the SeqShop Workshop
-13
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Setup in person at the SeqShop Workshop
+13
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Introduction
+53
SeqShop: Estimates of Genetic Ancestry Practical, December 2014
Restarting SNP Call on your own Genome
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SeqShop: Analysis of Structural Variation Practical, December 2014
What does a real SV look like?
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SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
Normalization
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SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
What is GotCloud snpcall doing?
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SeqShop: Sequence Mapping and Assembly Practical, December 2014
Logging Off
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SeqShop: Analysis of Structural Variation Practical, December 2014
Starting SNP Call on your own Genome
-139
SeqShop: Analysis of Structural Variation Practical, December 2014
How many variants are filtered out?
SeqShop: Analysis of Structural Variation Practical, December 2014
no edit summary
+13
SeqShop: Analysis of Structural Variation Practical, December 2014
Introduction
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SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
Comparison with other data sets
