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Jump to navigationJump to search- 22:48, 18 May 2015 diff hist +48 SeqShop: Calling Your Own Genome, May 2015 →Setup Variables
- 22:47, 18 May 2015 diff hist 0 SeqShop: Calling Your Own Genome, May 2015
- 22:47, 18 May 2015 diff hist -259 SeqShop: Calling Your Own Genome, May 2015 →Tuesday - Start INDEL Calling
- 22:12, 18 May 2015 diff hist -433 SeqShop: Calling Your Own Genome, May 2015 →Need a BAM Index File?
- 11:34, 18 May 2015 diff hist -68 SeqShop: Aligning Your Own Genome, May 2015 current
- 17:19, 17 May 2015 diff hist -1,185 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
- 17:04, 17 May 2015 diff hist -58 SeqShop: May 2015
- 17:02, 17 May 2015 diff hist 0 N File:Mapping and assembly May2015.pdf current
- 17:02, 17 May 2015 diff hist 0 N File:Analysis of SV May2015.pdf current
- 17:00, 17 May 2015 diff hist 0 File:Mapping and assembly.pdf Mktrost uploaded a new version of "File:Mapping and assembly.pdf": Reverted to version as of 13:19, 16 June 2014 current
- 16:58, 17 May 2015 diff hist 0 File:Mapping and assembly.pdf Mktrost uploaded a new version of "File:Mapping and assembly.pdf"
- 16:57, 17 May 2015 diff hist +13 SeqShop: Aligning Your Own Genome, May 2015 →Recalibration Comparison
- 16:56, 17 May 2015 diff hist +1 SeqShop: Aligning Your Own Genome, May 2015
- 16:54, 17 May 2015 diff hist -57 Template:SeqShopLoginSubMachine →Login to the seqshop Machine current
- 16:32, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 16:31, 17 May 2015 diff hist -666 SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 16:18, 17 May 2015 diff hist +9 Template:SeqShopLogin current
- 16:18, 17 May 2015 diff hist +419 N Template:SeqShopLoginSubMachine Created page with "=== Login to the seqshop Machine === So you can each run multiple jobs at once, we will have you run on 4 different machines within our seqshop setup. * You can only access th..."
- 16:17, 17 May 2015 diff hist -2,462 Template:SeqShopLogin Replaced content with "{{SeqShopLoginA}} {{SeqShopLoginB}}"
- 16:16, 17 May 2015 diff hist +2,076 N Template:SeqShopLoginA Created page with "=== Login to the seqshop-server Linux Machine === <div class="mw-collapsible" style="width:600px"> '' This section will appear redundantly in each session. If you are already ..." current
- 15:58, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud indel.pdf current
- 15:58, 17 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Introduction
- 15:57, 17 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Introduction
- 15:57, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud snpcall.pdf current
- 15:35, 17 May 2015 diff hist 0 SeqShop: Aligning Your Own Genome, May 2015 →FEEDBACK!
- 15:25, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud Align.pdf current
- 15:24, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Introduction
- 15:24, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 15:21, 17 May 2015 diff hist -5 SeqShop: Sequence Mapping and Assembly Practical Redirected page to SeqShop: Sequence Mapping and Assembly Practical, May 2015 current
- 15:19, 17 May 2015 diff hist 0 File:May2015 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:May2015 SeqShop - Linux.pdf" current
- 15:16, 17 May 2015 diff hist 0 N File:May2015 SeqShop - Linux.pdf
- 16:35, 15 May 2015 diff hist -4 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Download the example data current
- 16:33, 15 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 12:17, 14 May 2015 diff hist +447 GotCloud: Versions →Version 1.16 (Full Release on 2/25/2015) current
- 12:00, 14 May 2015 diff hist 0 GotCloud: Genetic Reference and Resource Files →DBSNP VCF File current
- 10:15, 14 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Download & Build GotCloud
- 18:11, 12 March 2015 diff hist +191 BamUtil: clipOverlap →Overview of the clipOverlap function of bamUtil
- 18:09, 12 March 2015 diff hist +92 BamUtil: clipOverlap →Parameters
- 18:09, 12 March 2015 diff hist +406 BamUtil: clipOverlap →Skip Records with any of the Specified Flags (--excludeFlags)
- 15:04, 12 March 2015 diff hist +427 BamUtil: trimBam
- 14:51, 12 March 2015 diff hist +247 BamUtil: trimBam →Usage
- 13:52, 9 March 2015 diff hist +820 GotCloud: Creating a New Pipeline
- 13:04, 9 March 2015 diff hist +106 GotCloud →Running GotCloud Software
- 11:36, 9 March 2015 diff hist -3 BamUtil: trimBam →Optional parameters
- 11:08, 9 March 2015 diff hist +680 BamUtil: trimBam →Parameters
- 11:05, 9 March 2015 diff hist +604 BamUtil: trimBam →Usage
- 11:03, 9 March 2015 diff hist +79 BamUtil: trimBam →Overview of the trimBam function of bamUtil
- 11:02, 9 March 2015 diff hist +23 Template:BamUtilPrograms current
- 14:23, 6 March 2015 diff hist +1,207 GotCloud: Variant Calling Pipeline →Running
- 16:39, 3 March 2015 diff hist +1,753 GotCloud: Creating a New Pipeline →Creating a New BAM Processing Pipeline
- 10:50, 2 March 2015 diff hist +925 GotCloud: FAQs →Variant Calling Pipeline FAQs
- 16:49, 26 February 2015 diff hist +1,918 GotCloud: FAQs →Compiling FAQs
- 16:38, 26 February 2015 diff hist 0 GotCloud: FAQs →Compiling FAQs
- 16:38, 26 February 2015 diff hist +1,276 GotCloud: FAQs →Compiling FAQs
- 16:30, 26 February 2015 diff hist +528 GotCloud: FAQs →Version Problems
- 15:15, 26 February 2015 diff hist +1 Releasing GotCloud
- 15:14, 26 February 2015 diff hist +539 Releasing GotCloud
- 14:58, 26 February 2015 diff hist +101 GotCloud: Versions
- 14:48, 26 February 2015 diff hist +1,058 GotCloud: Versions →Version 1.16 (Full Release on 2/25/2015)
- 14:18, 26 February 2015 diff hist +81 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 14:11, 26 February 2015 diff hist +329 GotCloud: Alignment Pipeline →Recommended Settings
- 18:39, 25 February 2015 diff hist +65 GotCloud: Versions
- 18:28, 25 February 2015 diff hist -468 Releasing GotCloud
- 18:03, 25 February 2015 diff hist +1 GotCloud →UMich Development/Release How-To Notes
- 18:03, 25 February 2015 diff hist +32 N Creating Packages Mktrost moved page Creating Packages to Releasing GotCloud current
- 18:03, 25 February 2015 diff hist 0 m Releasing GotCloud Mktrost moved page Creating Packages to Releasing GotCloud
- 11:53, 24 February 2015 diff hist +203 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 14:13, 23 February 2015 diff hist +18 GotCloud →UMich Development/Release How-To Notes
- 14:11, 23 February 2015 diff hist +27 GotCloud →UMich Development/Release How-To Notes
- 10:13, 23 February 2015 diff hist +53 QPLOT →Parameters
- 10:11, 23 February 2015 diff hist +10 QPLOT →Parameters
- 12:27, 20 February 2015 diff hist +88 GotCloud: Creating a New Pipeline
- 12:25, 20 February 2015 diff hist +132 N GotCloud: Creating a New Pipeline Created page with "== Creating a New BAM Processing Pipeline == GotCloud allows you to configure new basic BAM processing pipelines via configuration."
- 12:17, 20 February 2015 diff hist -3 BamUtil →Full Release (includes libStatGen)
- 12:16, 20 February 2015 diff hist 0 N File:BamUtilLibStatGen.1.0.13.tgz current
- 12:12, 20 February 2015 diff hist +339 BamUtil →Full Release (includes libStatGen)
- 11:43, 20 February 2015 diff hist +741 BamUtil →Release of just BamUtil (does not include libStatGen)
- 11:06, 20 February 2015 diff hist +1,029 LibStatGen Download →Official Releases
- 16:20, 19 February 2015 diff hist -405 LibStatGen Troubleshooting →Possible Compile Errors
- 16:06, 19 February 2015 diff hist 0 C++ Library: libStatGen
- 14:57, 11 February 2015 diff hist +4 GotCloud: Variant Calling Options →Chromosome X Calling current
- 18:47, 10 February 2015 diff hist +2,006 GotCloud: GenomeSTRiP Pipeline →Configuration File current
- 18:18, 10 February 2015 diff hist +1 GotCloud: GenomeSTRiP Pipeline →Analysis Region Options
- 17:13, 10 February 2015 diff hist +3,346 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 16:46, 10 February 2015 diff hist +311 GotCloud: GenomeSTRiP Pipeline →BAM List File
- 16:46, 10 February 2015 diff hist +66 GotCloud: Variant Calling Pipeline →BAM List File
- 16:45, 10 February 2015 diff hist +299 GotCloud: Variant Calling Pipeline →BAM List File
- 16:42, 10 February 2015 diff hist +1,928 GotCloud: GenomeSTRiP Pipeline →Input Data
- 15:03, 10 February 2015 diff hist +700 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 14:18, 10 February 2015 diff hist -28 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 13:03, 10 February 2015 diff hist +41 GotCloud: GenomeSTRiP Pipeline →Genotyping Pipeline
- 13:02, 10 February 2015 diff hist +50 GotCloud: GenomeSTRiP Pipeline →Discovery Pipeline
- 13:02, 10 February 2015 diff hist +886 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 12:49, 10 February 2015 diff hist +1 GotCloud: GenomeSTRiP Pipeline →Metadata Pipeline
- 18:36, 9 February 2015 diff hist +1,592 GotCloud: GenomeSTRiP Pipeline
- 18:15, 9 February 2015 diff hist +3,007 N GotCloud: GenomeSTRiP Pipeline Created page with "Back to parent: GotCloud == GenomeSTRiP == GenomeSTRiP was developed at the Broad Institute and at the McCarroll Lab at the Harvard Medical School Department of Genetics:..."
- 12:44, 6 February 2015 diff hist -1 Screen Commands current
- 12:44, 6 February 2015 diff hist +215 Screen Commands
- 10:39, 19 January 2015 diff hist +911 GotCloud: FAQs →Variant Calling Pipeline FAQs
- 14:42, 13 January 2015 diff hist +180 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files