Upload log
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(newest | oldest) View (newer 500 | older 500) (20 | 50 | 100 | 250 | 500)- 23:40, 26 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec07-handout.pdf
- 23:40, 26 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec07-presentation.pdf
- 23:39, 26 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec08-presentation.pdf
- 23:39, 26 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec08-handout.pdf
- 02:25, 26 September 2012 Goncalo talk contribs uploaded a new version of File:666.10.pdf (Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters.)
- 01:27, 25 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-hw2.pdf
- 01:25, 25 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-hw2.pdf
- 01:24, 25 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec07-presentation.pdf
- 01:24, 25 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec07-handout.pdf
- 01:24, 25 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec06-presentation.pdf
- 01:23, 25 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec06-handout.pdf
- 22:38, 19 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec06-handout.pdf
- 22:35, 19 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec06-presentation.pdf
- 22:35, 19 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec06-handout.pdf
- 22:35, 19 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec05-handout.pdf
- 22:31, 19 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec05-presentation.pdf
- 22:31, 19 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec05-handout.pdf
- 18:18, 19 September 2012 Mktrost talk contribs uploaded File:BamUtilLibStatGen.1.0.3.tgz
- 18:18, 19 September 2012 Mktrost talk contribs uploaded File:BamUtil.1.0.3.tgz
- 17:16, 19 September 2012 Mktrost talk contribs uploaded File:LibStatGen.1.0.3.tgz
- 23:05, 18 September 2012 Goncalo talk contribs uploaded a new version of File:666.06.pdf
- 11:07, 18 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec04-presentation.pdf
- 11:07, 18 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec04-handout.pdf
- 10:32, 18 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec03-presentation.pdf
- 10:32, 18 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec03-handout.pdf
- 00:13, 18 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec05-presentation.pdf
- 00:13, 18 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec05-handout.pdf
- 00:13, 18 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-hw1.pdf
- 22:54, 13 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-hw1.pdf
- 23:12, 12 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec04-presentation.pdf
- 23:12, 12 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec04-handout.pdf
- 23:06, 12 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-hw1.pdf
- 23:05, 12 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-hw0.pdf
- 22:49, 10 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-hw1.pdf
- 22:44, 10 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec03-presentation.pdf
- 22:44, 10 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec03-handout.pdf
- 22:41, 10 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec02-presentation.pdf
- 22:41, 10 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec02-handout.pdf
- 22:40, 10 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec01-presentation.pdf
- 22:40, 10 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec01-handout.pdf
- 08:40, 10 September 2012 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Minor updates.)
- 22:53, 5 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec02-presentation.pdf
- 22:53, 5 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec02-handout.pdf
- 22:52, 5 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec01-presentation.pdf
- 22:51, 5 September 2012 Hmkang talk contribs uploaded a new version of File:Bios615-fa12-lec01-handout.pdf
- 02:15, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf (Yet more minor edits, this time listing potential group projects.)
- 02:07, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf (Minor update for 2012, adding more detail to HWE discussion, link to online class notes, and potential discussion of grading scheme)
- 02:02, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf
- 21:54, 3 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec01-presentation.pdf
- 21:53, 3 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-lec01-handout.pdf
- 21:36, 3 September 2012 Hmkang talk contribs uploaded File:Bios615-fa12-hw0.pdf
- 15:43, 3 August 2012 Bingshan talk contribs uploaded File:Readcount.0.01.tar.gz
- 16:44, 3 July 2012 Hmkang talk contribs uploaded File:Tes b score epacts mh gw.png
- 16:44, 3 July 2012 Hmkang talk contribs uploaded File:Test b score epacts mh.png
- 16:41, 3 July 2012 Hmkang talk contribs uploaded File:Test b score epacts qq.png
- 11:01, 18 May 2012 Cfuchsb talk contribs uploaded File:ExomePicks Windows.tgz
- 17:55, 17 May 2012 Mktrost talk contribs uploaded File:BamUtil.1.0.2.tgz
- 17:54, 17 May 2012 Mktrost talk contribs uploaded File:BamUtilLibStatGen.1.0.2.tgz
- 15:21, 16 May 2012 Mktrost talk contribs uploaded File:BamUtil.1.0.2.tgz
- 15:21, 16 May 2012 Mktrost talk contribs uploaded File:BamUtilLibStatGen.1.0.2.tgz
- 15:13, 16 May 2012 Mktrost talk contribs uploaded File:LibStatGen.1.0.2.tgz
- 11:18, 4 May 2012 Mktrost talk contribs uploaded File:LibStatGen.1.0.1.tgz
- 11:18, 4 May 2012 Mktrost talk contribs uploaded File:BamUtil.1.0.1.tgz
- 11:18, 4 May 2012 Mktrost talk contribs uploaded File:BamUtilLibStatGen.1.0.1.tgz
- 13:57, 27 April 2012 Cristen talk contribs uploaded File:Willer-LDL-Seqmeeting-April272012.pdf (ESP LDL results from Cristen Willer)
- 17:12, 24 April 2012 Gjun talk contribs uploaded File:VerifyIDintensity.tgz
- 17:02, 18 April 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.04.tar.gz
- 23:04, 16 April 2012 Bingshan talk contribs uploaded File:Polymutt.0.04.tar.gz
- 00:46, 15 March 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.03.tar.gz
- 20:16, 14 March 2012 Bingshan talk contribs uploaded File:Polymutt.0.03.tar.gz
- 22:54, 13 March 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.02.tar.gz
- 12:12, 13 March 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.11.tar.gz
- 01:00, 7 March 2012 Bingshan talk contribs uploaded File:Polymutt.0.11.tar.gz
- 01:26, 16 February 2012 Bingshan talk contribs uploaded File:Sardinia Run 84 QA.pdf
- 17:29, 14 February 2012 Mreppell talk contribs uploaded a new version of File:FTEC noboost.tar.gz
- 17:29, 14 February 2012 Mreppell talk contribs uploaded a new version of File:FTEC withboost.tar.gz
- 17:28, 14 February 2012 Mreppell talk contribs uploaded a new version of File:FTEC src only.tar.gz
- 14:11, 14 February 2012 Mreppell talk contribs uploaded File:FTEC withboost.tar.gz (FTEC source code with Boost and TCLAP header files. )
- 14:10, 14 February 2012 Mreppell talk contribs uploaded File:FTEC noboost.tar.gz (FTEC Source Code with TCLAP header files but without Boost header files. )
- 14:08, 14 February 2012 Mreppell talk contribs uploaded File:FTEC src only.tar.gz (FTEC source code without TCLAP or Boost header files. )
- 11:51, 14 February 2012 Mreppell talk contribs uploaded a new version of File:Fte Document 06012012.pdf
- 11:49, 14 February 2012 Mreppell talk contribs uploaded a new version of File:Fte Document 06012012.pdf
- 11:43, 14 February 2012 Mreppell talk contribs uploaded a new version of File:Fte Document 06012012.pdf
- 00:02, 14 February 2012 Zhanxw talk contribs uploaded File:WrongBarCoding.pdf
- 00:02, 14 February 2012 Zhanxw talk contribs uploaded File:WrongBaseQual.pdf
- 23:44, 13 February 2012 Zhanxw talk contribs uploaded File:Qplot.Pool.9847.pdf
- 23:38, 13 February 2012 Zhanxw talk contribs uploaded File:Qplot.pdf
- 17:02, 11 February 2012 Bingshan talk contribs uploaded File:Polymutt.0.02.tar.gz (Version 0.02)
- 16:58, 11 February 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.01.tar.gz
- 01:26, 11 February 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.01.tar.gz
- 13:49, 6 February 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.01.tar.gz
- 18:30, 3 February 2012 Weich talk contribs uploaded File:TrioCaller-2012-02-02.tar.gz
- 03:02, 28 January 2012 Bingshan talk contribs uploaded a new version of File:Polymutt.0.01.tar.gz
- 13:49, 23 January 2012 Mreppell talk contribs uploaded a new version of File:FTEC withboost.tar
- 13:49, 23 January 2012 Mreppell talk contribs uploaded a new version of File:FTEC src only.tar
- 13:48, 23 January 2012 Mreppell talk contribs uploaded a new version of File:FTEC noboost.tar
- 11:23, 23 January 2012 Mreppell talk contribs uploaded a new version of File:FTEC noboost.tar
- 11:23, 23 January 2012 Mreppell talk contribs uploaded a new version of File:FTEC src only.tar
- 11:23, 23 January 2012 Mreppell talk contribs uploaded a new version of File:FTEC withboost.tar
- 13:59, 20 January 2012 Hmkang talk contribs uploaded File:Got2d-consensus-calling-and-stratification-2012-01-12.pdf
- 23:05, 18 January 2012 Mflick talk contribs uploaded File:High-ld.png (Shows regions of high LD in the human genome)
- 16:11, 13 January 2012 Mreppell talk contribs uploaded File:FTEC withboost.tar (FTEC source code with Boost and TCLAP header files.)
- 16:10, 13 January 2012 Mreppell talk contribs uploaded File:FTEC src only.tar (FTEC source code without TCLAP or Boost header files.)
- 16:09, 13 January 2012 Mreppell talk contribs uploaded File:FTEC noboost.tar (FTEC Source Code with TCLAP header files but without Boost header files.)
- 11:12, 13 January 2012 Mreppell talk contribs uploaded a new version of File:Fte v1.36.tar
- 11:08, 13 January 2012 Mreppell talk contribs uploaded a new version of File:Fte v1.36 src only.tar
- 11:08, 13 January 2012 Mreppell talk contribs uploaded a new version of File:Fte v1.36 noboost.tar
- 11:07, 13 January 2012 Mreppell talk contribs uploaded a new version of File:Fte Document 06012012.pdf
- 16:15, 11 January 2012 Mreppell talk contribs uploaded a new version of File:Fte Document 06012012.pdf
- 16:14, 11 January 2012 Mreppell talk contribs uploaded a new version of File:Fte Document 06012012.pdf
- 16:11, 11 January 2012 Mreppell talk contribs uploaded a new version of File:Fte Document 06012012.pdf (Updates downloading and compiling instructions)
- 16:01, 11 January 2012 Mreppell talk contribs uploaded File:Fte Document 06012012.pdf (This is the user's guide for the fte coalescent simulation program)
- 15:38, 11 January 2012 Mreppell talk contribs uploaded File:Fte v1.36 noboost.tar (This file contains the source code for the fte simulation program with the necessary TCLAP header files, but without Boost header files.)
- 15:38, 11 January 2012 Mreppell talk contribs uploaded File:Fte v1.36 src only.tar (This file contains the source code for the fte simulation program without Boost and TCLAP header files.)
- 15:16, 11 January 2012 Mreppell talk contribs uploaded a new version of File:Fte v1.36.tar
- 14:52, 11 January 2012 Mreppell talk contribs uploaded File:Fte v1.36.tar (This file contains the fte coalescent simulation program as well as the Boost and TCLAP header files necessary to compile and run the simulation program.)
- 17:21, 26 December 2011 Bingshan talk contribs uploaded a new version of File:Polymutt.0.01.tar.gz
- 02:06, 8 December 2011 Hmkang talk contribs uploaded File:Biostat615-homework-review.pdf
- 02:05, 8 December 2011 Hmkang talk contribs uploaded File:Biostat615-winter2011-final.pdf
- 04:49, 7 December 2011 Goncalo talk contribs uploaded File:666.24.pdf (Introduction to likelihood calculations in large pedigrees and the Elston Stewart algorithm.)
- 04:20, 7 December 2011 Goncalo talk contribs uploaded a new version of File:666.2011.01.pdf (Corrected small typos.)
- 04:19, 7 December 2011 Goncalo talk contribs uploaded a new version of File:666.2011.02.pdf (Corrected small typos.)
- 23:35, 5 December 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture23.pdf
- 09:13, 5 December 2011 Goncalo talk contribs uploaded File:666.2011.02.pdf (Copy Number Variation Analysis Using Sequence Data)
- 02:23, 1 December 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture22.pdf
- 07:43, 30 November 2011 Goncalo talk contribs uploaded File:666.2011.01.pdf (Introduction to Rare Variant Burden Tests and Related Issues. )
- 00:36, 30 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-homework06.pdf
- 08:32, 29 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture21.pdf
- 08:29, 29 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture21.pdf
- 08:11, 29 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-homework06.pdf
- 02:52, 29 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture21.pdf
- 05:59, 28 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.05.pdf (Added Sardinia example and discussion of consensus genotype calling.)
- 04:25, 28 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Fixes several small typos in worked imputation examples.)
- 07:49, 23 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.04.pdf (Updates to introduce base quality, mapping quality and base alignment quality.)
- 00:00, 22 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture20.pdf
- 06:55, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.17.pdf (Minor updates to figures.)
- 06:54, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Minor updates to figures.)
- 06:54, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Minor cosmetic updates.)
- 23:13, 16 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture19.pdf
- 22:59, 16 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture18.pdf
- 22:53, 16 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture19.pdf
- 07:17, 16 November 2011 Goncalo talk contribs uploaded a new version of File:666.20.pdf (This version removes page numbers (a visual nuisance) and adds a mention of approaches that use empirical, rather than pedigree based, kinship coefficients.)
- 07:15, 16 November 2011 Goncalo talk contribs uploaded a new version of File:666.20.pdf
- 18:48, 15 November 2011 Bingshan talk contribs uploaded a new version of File:Polymutt.0.01.tar.gz
- 22:47, 14 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture18.pdf
- 22:41, 14 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-homework05.pdf
- 22:40, 14 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture18.pdf
- 06:31, 10 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture17.pdf
- 08:01, 9 November 2011 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Fixed typos, added example of age-related macular degeneration linkage study.)
- 11:35, 8 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture16.pdf
- 11:34, 8 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture15.pdf
- 23:17, 7 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture16.pdf
- 05:12, 7 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Simplified lecture to make it fit more easily into one hour.)
- 01:25, 3 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture15.pdf
- 01:24, 3 November 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-fall2011-lecture14.pdf
- 01:47, 1 November 2011 Hmkang talk contribs uploaded File:Biostat615-homework04.pdf
- 01:42, 1 November 2011 Hmkang talk contribs uploaded File:Biostat615-fall2011-lecture14.pdf
- 16:40, 31 October 2011 Goncalo talk contribs uploaded File:Pval-qq-sample.png (Sample QQ Plot)
- 12:24, 29 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-lecture11-2011-10-20.pdf
- 13:41, 28 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-lecture11-2011-10-20.pdf
- 13:41, 28 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture10-handout.pdf
- 23:24, 26 October 2011 Hmkang talk contribs uploaded File:Biostat615-lecture13-2011-10-27.pdf
- 21:48, 26 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-homework03.pdf
- 23:24, 25 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-lecture11-2011-10-20.pdf
- 11:10, 25 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-homework03.pdf
- 11:08, 25 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture10-handout.pdf
- 11:06, 25 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-lecture11-2011-10-20.pdf
- 21:49, 24 October 2011 Hmkang talk contribs uploaded File:Biostat615-lecture12-2011-10-25.pdf
- 02:22, 24 October 2011 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Added ACE gene example)
- 07:53, 20 October 2011 Hmkang talk contribs uploaded File:Biostat615-homework03.pdf
- 07:13, 20 October 2011 Hmkang talk contribs uploaded File:Biostat615-lecture11-2011-10-20.pdf
- 08:57, 11 October 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-homework02-solutions.pdf
- 06:37, 11 October 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-homework01-solutions.pdf
- 21:17, 10 October 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture10-presentation.pdf
- 21:16, 10 October 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture10-handout.pdf
- 18:04, 10 October 2011 Mktrost talk contribs uploaded File:BamUtil.1.0.0.tgz
- 17:42, 10 October 2011 Mktrost talk contribs uploaded File:BamUtilLibStatGen.1.0.0.tgz (BamUtil first release containing libStatGen)
- 17:36, 10 October 2011 Mktrost talk contribs uploaded File:LibStatGen.1.0.0.tgz (Initial version of the library)
- 09:41, 10 October 2011 Goncalo talk contribs uploaded File:2011.09 - Exome Chip.pdf (Summary of exome chip design process and content.)
- 04:54, 6 October 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-midterm-2011-winter-.pdf
- 22:12, 3 October 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture09-presentation.pdf
- 22:11, 3 October 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture09-handout.pdf
- 06:05, 3 October 2011 Goncalo talk contribs uploaded a new version of File:666.06.pdf (Minor updates to the lecture, including: * Explicit formulae for Tajima's D (very complicated!) * More extended discussion of the impact of population size on the coalescent)
- 09:28, 2 October 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-homework02.pdf
- 00:32, 29 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture08-presentation.pdf
- 00:31, 29 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture08-handout.pdf
- 08:35, 28 September 2011 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Minor typo corrections.)
- 08:34, 28 September 2011 Goncalo talk contribs uploaded a new version of File:666.05.pdf (Added frequency spectrum from 12,000 individuals.)
- 07:03, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture01-presentation.pdf
- 07:03, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture02-presentation.pdf
- 07:02, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture03-presentation.pdf
- 07:02, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture04-presentation.pdf
- 07:01, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture05-presentation.pdf
- 07:01, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture06-presentation.pdf
- 07:00, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture06-handout.pdf
- 06:59, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture04-handout.pdf
- 06:59, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture05-handout.pdf
- 06:59, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture04-handout.pdf
- 06:58, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture04-handout.pdf
- 06:58, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture03-handout.pdf
- 06:57, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture02-handout.pdf
- 06:57, 27 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture01-handout.pdf
- 06:54, 27 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-homework02.pdf
- 06:53, 27 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture07-presentation.pdf
- 06:52, 27 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture07-handout.pdf
- 05:21, 22 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture06-handout.pdf
- 05:19, 22 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture06-presentation.pdf
- 08:29, 20 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture05-handout.pdf
- 08:29, 20 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture05-presentation.pdf
- 23:19, 19 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture05-presentation.pdf
- 23:18, 19 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture05-handout.pdf
- 04:12, 19 September 2011 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Minor updates to the lecture - added recommended reading list, synchronized content with 2011 lecture series)
- 00:16, 15 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture04-handout.pdf
- 00:14, 15 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture04-presentation.pdf
- 01:57, 13 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture03-presentation.pdf
- 01:56, 13 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-lecture03-handout.pdf
- 01:54, 13 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture03-handout.pdf
- 01:52, 13 September 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-Fall2011-homework01.pdf
- 01:51, 13 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-homework01.pdf
- 01:50, 13 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture03-presentation.pdf
- 07:26, 12 September 2011 Goncalo talk contribs uploaded File:2011.666.01.pdf (Course Introduction and Hardy Weinberg Lecture Combined into A Single Class)
- 01:44, 8 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture02-handout.pdf
- 01:42, 8 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture02-presentation.pdf
- 00:25, 6 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture01-handout.pdf
- 00:23, 6 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture01-presentation.pdf
- 00:21, 6 September 2011 Hmkang talk contribs uploaded File:Biostat615-Fall2011-lecture01.pdf
- 23:46, 15 August 2011 Bingshan talk contribs uploaded File:Qplot.0.01.tar.gz
- 14:02, 13 July 2011 Bingshan talk contribs uploaded File:Polymutt.0.01.tar.gz
- 17:52, 12 July 2011 Mktrost talk contribs uploaded File:GitRevertedFile.png
- 17:52, 12 July 2011 Mktrost talk contribs uploaded File:GitAnotherUpdateFile.png
- 14:57, 12 July 2011 Mktrost talk contribs uploaded File:GitRevert.png
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- 21:02, 2 December 2010 Goncalo talk contribs uploaded File:666.Zollner.CNV.pdf (Guest lecture by Sebastian Zollner on Copy Number Variation.)
- 23:39, 1 December 2010 Goncalo talk contribs uploaded File:666.2010.05.pdf
- 15:55, 29 November 2010 Goncalo talk contribs uploaded File:666.2010.04.pdf (Basic introduction to some of the issues and opportunities posed by whole genome sequence studies.)
- 19:10, 24 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf
- 07:14, 23 November 2010 Goncalo talk contribs uploaded File:666.2010.03.pdf (Introduction to Genotype Imputation, describes imputation in families and later in samples of unrelated individuals.)
- 03:47, 18 November 2010 Goncalo talk contribs uploaded a new version of File:666.17.pdf (Minor refinements to axis.)
- 14:32, 17 November 2010 Mktrost talk contribs uploaded a new version of File:StatGen.0.1.2.tgz (Quick fix to update the usage for fastqValidator)
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- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Fixes minor errors.)
- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Updated version of lecture with more detailed review of ASP analysis)
- 02:59, 11 November 2010 Goncalo talk contribs uploaded File:666.2010.02.pdf (Lecture describing Risch's MLS and Holman's Possible Triangle. )
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- 11:07, 9 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.01.pdf (Lecture on power calculation for genomewide association studies. Also introduces the idea of two stage genomewide association studies. ** Lots of typos fixed in this version **)
- 06:19, 9 November 2010 Goncalo talk contribs uploaded File:666.2010.01.pdf
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- 10:23, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Fixed a small typo. Compared to original version, this one also includes slightly more informative titles.)
- 08:14, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Minor update to include kinship coefficients.)
- 04:27, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Added a summary slide at the beginning. )
- 04:18, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Updated lecture to include QQ plots, brief mention of principal component analysis.)
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- 19:01, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Typo fixes.)
- 07:58, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Minor update.)
- 03:53, 7 October 2010 Goncalo talk contribs uploaded a new version of File:666.11.pdf (Minor typos fixed.)
- 03:53, 7 October 2010 Goncalo talk contribs uploaded File:666.10 - E-M algorithm.ppt
- 01:51, 5 October 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixes several typos.)
- 01:51, 5 October 2010 Goncalo talk contribs uploaded a new version of File:666.09.Master.pdf (Minor clarification of different uses of N.)
- 16:37, 3 October 2010 Remator3 talk contribs uploaded File:Zepp21.jpg (Led Zeppelin)
- 08:28, 30 September 2010 Goncalo talk contribs uploaded File:666.09.Master.pdf (Lecturer's slides for lecture on allele frequency estimation. Include solutions to in class exercises.)
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- 01:50, 21 September 2010 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Minor typos fixed.)
- 23:33, 15 September 2010 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Introductory lecture on the coalescent. This version fixes some minor typos.)
- 02:25, 14 September 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf
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- 22:34, 8 September 2010 Goncalo talk contribs uploaded a new version of File:666.02.pdf
- 05:46, 7 September 2010 Goncalo talk contribs uploaded a new version of File:666.01.pdf (Biostatistics 666 Introductory Lecture as of 2010/09/07)
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- 09:10, 22 July 2010 Goncalo talk contribs uploaded File:QQ-plot-problem.png (QQ plot for a problematic study; from McCarthy et al (2008).)
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- 10:06, 20 April 2010 Goncalo talk contribs uploaded a new version of File:666.21.pdf
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- 03:55, 6 April 2010 Goncalo talk contribs uploaded a new version of File:666.19.pdf
- 02:43, 6 April 2010 Goncalo talk contribs uploaded File:666.19.pdf (Non-parametric linkage analysis, parametric linkage analysis, information content calculations.)
- 00:50, 1 April 2010 Goncalo talk contribs uploaded File:666.18.pdf (Introduces the Lander-Green algorithm.)
- 00:35, 1 April 2010 Goncalo talk contribs uploaded a new version of File:666.17.pdf
- 05:56, 30 March 2010 Goncalo talk contribs uploaded File:666.17.pdf (Describes approaches for multipoint analysis in different relative pairs. Describes approaches for checking genetic relationships. )
- 07:09, 23 March 2010 Goncalo talk contribs uploaded File:666.16.pdf (Introduces multipoint analysis, in the context of sibling pairs.)
- 07:09, 23 March 2010 Goncalo talk contribs uploaded File:666.15.pdf (Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint.)
- 18:51, 22 March 2010 Zhanxw talk contribs uploaded a new version of File:2009.08 Group Retreat Photo.jpg
- 07:17, 18 March 2010 Goncalo talk contribs uploaded File:666.14.pdf
- 12:45, 9 March 2010 Ljbaker talk contribs uploaded File:GoncaloAbecasis.jpg
- 02:56, 22 February 2010 Goncalo talk contribs uploaded File:666.13.pdf (Introduces the problem of population stratification in the context of an association study. Discusses three possible solutions: a) Family based association tests. b) The genomic control method. c) Genotype based matching approaches. )
- 08:15, 18 February 2010 Goncalo talk contribs uploaded File:666.12.pdf (Introduces Haplotype Association Tests.)
- 22:59, 15 February 2010 Goncalo talk contribs uploaded a new version of File:666.10.pdf (Introduction to E-M Algorithm in Genetics. This version fixes reference to Excoffier and Slatkin paper. )
- 22:58, 15 February 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixed reference to Excoffier paper.)
- 22:53, 15 February 2010 Goncalo talk contribs uploaded File:666.11.pdf (Haplotyping Algorithms. February 16, 2010)
- 09:46, 11 February 2010 Goncalo talk contribs uploaded File:666.10.pdf
- 01:17, 11 February 2010 Goncalo talk contribs uploaded File:666.08.pdf (Advanced guest lecture by Sebastian Zoellner. Focused on computation methods related to the coalescent. February 4, 2010.)
- 01:16, 11 February 2010 Goncalo talk contribs uploaded File:666.07.pdf (Advanced lecture on the coalescent by guest lecturer, Sebastian Zoellner. Focused on coalescent modeling with changing population sizes. February 2, 2009.)
- 12:01, 9 February 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixed minor typos. February 9, 2010)
- 04:49, 9 February 2010 Goncalo talk contribs uploaded File:666.09.pdf (This lecture reviews maximum likelihood estimation and applies maximum likelihood concepts to derive estimates of allele frequency in several simple settings. Last update February 9, 2010.)
- 04:23, 28 January 2010 Goncalo talk contribs uploaded File:666.06.pdf (Coalescent with Recombination or Migration January 26, 2010)
- 02:15, 26 January 2010 Goncalo talk contribs uploaded File:666.05.pdf (This lecture covers three concepts: * Estimating theta using sequence data as input. * Modeling frequency spectra using simulations * Analytically modeling the distribution of total variant count January 26, 2010)
- 09:37, 21 January 2010 Goncalo talk contribs uploaded File:666.04.pdf (Introduction to the Coalescent. January 21, 2010)
- 04:23, 19 January 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Introduction to Linkage Disequilibrium. Further tweaks as of January 19, 2010. The lecture is presently too long and should be split into two.)
- 03:13, 19 January 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Updated Lecture Notes, as of January 19, 2010.)
- 08:44, 14 January 2010 Goncalo talk contribs uploaded File:666.03.pdf (Introduces Measures of Linkage Disequibrium and Related Concepts Last updated January 14, 2010)
- 02:43, 12 January 2010 Goncalo talk contribs uploaded File:666.02.pdf (Lecture on Hardy Weinberg Equilibrium January 12, 2009)
- 00:26, 7 January 2010 Goncalo talk contribs uploaded File:666.01.pdf (Biostatistics 666 Introductory Lecture as of 2010/01/06.)
- 01:32, 14 November 2009 Goncalo talk contribs uploaded File:2009.08 Group Retreat Photo.jpg (Photo from Group Retreat in August 2008.)