3,045
edits
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From Genome Analysis Wiki
Jump to navigationJump to search→Skip Records with any of the Specified Flags (--excludeFlags)
* supplementary reads
* supplementary reads
The Deduper will not work if secondary or supplementary reads are not excluded. It will not properly find the mates since there will be more than 2 reads with the same mate information.
=== Turn on Verbose Mode (<code>--verbose</code>) ===
=== Turn on Verbose Mode (<code>--verbose</code>) ===
