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8 bytes removed
, 14:38, 14 February 2016
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| <div class=" mw-collapsible mw-collapsed"> | | <div class=" mw-collapsible mw-collapsed"> |
| | | |
− | vt profile_vntrs ../20150812_spectrum/vntrs.sites.bcf -g ~/ref/vt/grch37/vntr.reference.txt | + | vt profile_vntrs vntrs.sites.bcf -g vntr.reference.txt |
− | profile_vntrs v0.5 | + | |
− | | + | profile_vntrs v0.5 z,br. |
− | Options: input VCF file ../20150812_spectrum/vntrs.sites.bcf | + | Options: input VCF file ../20150812_spectrum/vntrs.sites.bcf |
| [g] reference data sets list file /net/fantasia/home/atks/ref/vt/grch37/vntr.reference.txt | | [g] reference data sets list file /net/fantasia/home/atks/ref/vt/grch37/vntr.reference.txt |
| | | |
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| no low complexity 2686460 (47.46%) | | no low complexity 2686460 (47.46%) |
| no coding 17911 (0.32%) | | no coding 17911 (0.32%) |
− | no redundant 1312209 (23.18%) | + | no redundant 1312209 (23.18%) <br> |
− | | |
| trf_lobstr (1638516) | | trf_lobstr (1638516) |
| A-B 3269285 | | A-B 3269285 |
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| A&B2 723195 | | A&B2 723195 |
| B-A~ 710075 | | B-A~ 710075 |
− | B-A 205246 | + | B-A 205246 <br> |
− | | |
| trf_repeatseq (1624553) | | trf_repeatseq (1624553) |
| A-B 3291652 | | A-B 3291652 |
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| A&B2 716838 | | A&B2 716838 |
| B-A~ 703948 | | B-A~ 703948 |
− | B-A 203767 | + | B-A 203767 <br> |
− | | |
| trf_vntrseek (230306) | | trf_vntrseek (230306) |
| A-B 5384453 | | A-B 5384453 |
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| A&B2 4973 | | A&B2 4973 |
| B-A~ 92496 | | B-A~ 92496 |
− | B-A 132837 | + | B-A 132837 <br> |
− | | |
| codis+ (15) | | codis+ (15) |
| A-B 5660794 | | A-B 5660794 |