1,102
edits
Changes
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<div class=" mw-collapsible mw-collapsed">
<div class=" mw-collapsible mw-collapsed">
vt profile_vntrs ../20150812_spectrum/vntrs.sites.bcf -g ~/ref/vt/grch37/vntr.reference.txt
vt profile_vntrs vntrs.sites.bcf -g vntr.reference.txt
profile_vntrs v0.5
profile_vntrs v0.5 z,br.
Options: input VCF file ../20150812_spectrum/vntrs.sites.bcf
Options: input VCF file ../20150812_spectrum/vntrs.sites.bcf
[g] reference data sets list file /net/fantasia/home/atks/ref/vt/grch37/vntr.reference.txt
[g] reference data sets list file /net/fantasia/home/atks/ref/vt/grch37/vntr.reference.txt
no low complexity 2686460 (47.46%)
no low complexity 2686460 (47.46%)
no coding 17911 (0.32%)
no coding 17911 (0.32%)
no redundant 1312209 (23.18%)
no redundant 1312209 (23.18%) <br>
trf_lobstr (1638516)
trf_lobstr (1638516)
A-B 3269285
A-B 3269285
A&B2 723195
A&B2 723195
B-A~ 710075
B-A~ 710075
B-A 205246
B-A 205246 <br>
trf_repeatseq (1624553)
trf_repeatseq (1624553)
A-B 3291652
A-B 3291652
A&B2 716838
A&B2 716838
B-A~ 703948
B-A~ 703948
B-A 203767
B-A 203767 <br>
trf_vntrseek (230306)
trf_vntrseek (230306)
A-B 5384453
A-B 5384453
A&B2 4973
A&B2 4973
B-A~ 92496
B-A~ 92496
B-A 132837
B-A 132837 <br>
codis+ (15)
codis+ (15)
A-B 5660794
A-B 5660794
