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Back to parent: [[GotCloud]]
Back to parent: [[GotCloud]]
The Alignment/Mapping Pipeline takes FASTQ files and generates recalibrated BAM files from them.
The Alignment/Mapping Pipeline takes [http://en.wikipedia.org/wiki/FASTQ_format FASTQ files] and generates recalibrated [[BAM|BAM (Binary Sequence Alignment/Map format) files]] from them.
== Running the GotCloud Alignment Pipeline ==
== Running the GotCloud Alignment Pipeline ==
