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GotCloud: Alignment Pipeline (view source)

Revision as of 12:03, 24 January 2014

123 bytes removed ,  12:03, 24 January 2014
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* BWA_MAX_MEM = 2000000000  
 
* BWA_MAX_MEM = 2000000000  
 
** Maximum amount of memory used by samtools sort after running bwa  
 
** Maximum amount of memory used by samtools sort after running bwa  
−
* JAVA_MEM = -Xmx4g
  −
** Set the maximum size of the java memory allocation pool.  Default is 4g, adjust that as necessary.
   
*BATCH_TYPE = mosix
 
*BATCH_TYPE = mosix
 
** Tells the cluster gateway to use mosix to send jobs to the client nodes.
 
** Tells the cluster gateway to use mosix to send jobs to the client nodes.
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/9395"

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