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Examine the PDF:
 
Examine the PDF:
 
  evince  ${OUT}/QCFiles/HG00551.qplot.pdf&
 
  evince  ${OUT}/QCFiles/HG00551.qplot.pdf&
 +
 +
It is ok if you see a warning message when opening evince.  It should still open.  If not, let me know.  To close evince, just close the pdf window.
    
;Does the Empirical vs reported Phred score look as good as we would like?
 
;Does the Empirical vs reported Phred score look as good as we would like?

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