From Genome Analysis Wiki
Jump to navigationJump to search
8 bytes removed
, 21:51, 19 November 2009
mLine 73: |
Line 73: |
| == Minimum read length requirement == | | == Minimum read length requirement == |
| | | |
− | Keep in mind that the requirement of minimum color space read length for KARMA is twice the size of word plus two (including leading primer).<br> (For nucleotide space, the minimum length requirement is twice the word size.)<br> For example, KARMA use word size of 15 by default, so it will try to map color space reads that are longer than 32 base pairs.<br>
| + | Keep in mind that KARMA requires color space reads that are at least twice as long as the index word size plus two (including the leading primer base). (For nucleotide space, the minimum read length is twice the word size.) For example, KARMA uses an index word size of 15 by default, so it will only map color space reads that are 32 base pairs or longer.<br> |
| | | |
| == Auxiliary tools == | | == Auxiliary tools == |