111
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchSeqShop: Estimates of Genetic Ancestry Practical, June 2014 (view source)
Revision as of 13:28, 18 June 2014
, 13:28, 18 June 2014→Preparing input files for LASER
Step 0: vcf --> geno
Step 0: vcf --> geno
This step prepares the reference panel by converting a VCF genotype file to a GENO file. We will skip this step and use a ready-to-use HGDP reference panel. A typical command to run the vcf2geno tool is given in the file "./LASER-2.01/vcf2geno/cmd.sh".
This step prepares the reference panel by converting a VCF genotype file to a GENO file. We will skip this step and use a ready-to-use HGDP reference panel. A typical command to run the vcf2geno tool is given in the file "./LASER-2.01/vcf2geno/cmd.sh":
./vcf2geno --inVcf exampleVCF/example.vcf.gz --updateID test.updateId --out test
