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Revision as of 13:30, 18 June 2014
, 13:30, 18 June 2014→Preparing input files for LASER
Step 2: pileup --> seq
Step 2: pileup --> seq
In this step, we will generate a file called "hapmap_trios.seq", containing the information of 6 samples. It takes about 30 seconds to run.
We used the pre-generated pileup files in the $BAM folder.
We will use the pre-generated pileup files in the $BAM folder.
python ./LASER-2.01/pileup2seq/pileup2seq.py \
python ./LASER-2.01/pileup2seq/pileup2seq.py \
