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, 21:57, 19 November 2009
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| == Auxiliary tools == | | == Auxiliary tools == |
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− | The ABI SOLiD platform generates separate FASTA files (e.g. XXX.csfasta) and quality files (e.g. XXX\_QV.qual). We provide a script, ''solid2csfastq.py'', to convert these into a single color space FASTQ file (e.g. XXX.csfastq). We believe a single color space FASTQ file simplifies post processing.<br> | + | The ABI SOLiD platform generates separate FASTA and quality files, usually named XXX.csfasta and XXX\_QV.qual. We provide a script ''solid2csfastq.py'' which converts these into a single color space FASTQ file named XXX.csfastq. We believe that a single color space FASTQ file simplifies post processing.<br> |
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| == Choose an appropriate size for word index == | | == Choose an appropriate size for word index == |