3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchSeqShop: Sequence Mapping and Assembly Practical, June 2014 (view source)
Revision as of 15:46, 25 June 2014
, 15:46, 25 June 2014→Setup when running on your own outside of the SeqShop Workshop
=== Setup your run environment ===
=== Setup your run environment ===
Environment variables will be used throughout the tutorial.
We recommend that you setup these variables so you won't have to modify every command in the tutorial.
<div class="mw-collapsible mw-collapsed" style="width:500px">
I'm using bash (replace the paths below with the appropriate paths):
<div class="mw-collapsible mw-collapsed" style="width:200px">
<div class="mw-collapsible-content">
<div class="mw-collapsible-content">
* Point to where you installed GotCloud
*:<pre>export GC=/home/username/gotcloud</pre>
* Point to where you installed the seqshop files
*:<pre>export SS=/home/username/seqshop/</pre>
* Point to where you want the output to go
*:<pre>export OUT=/home/username/seqshop_output/</pre>
</div>
</div>
</div>
</div>
<div class="mw-collapsible mw-collapsed" style="width:500px">
I'm using tcsh (replace the paths below with the appropriate paths):
<div class="mw-collapsible-content">
* Point to where you installed GotCloud
*:<pre>setenv GC /home/username/gotcloud</pre>
* Point to where you installed the seqshop files
*:<pre>setenv SS /home/username/seqshop/</pre>
* Point to where you want the output to go
*:<pre>setenv OUT /home/username/seqshop_output/</pre>
</div>
</div>
</div>
</div>
</div>
</div>
