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GotCloud: Variant Calling Pipeline (view source)

Revision as of 14:01, 23 October 2014

52 bytes removed ,  14:01, 23 October 2014
→‎Reference Files
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== Reference Files ==
 
== Reference Files ==
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The variant calling pipeline requires multiple reference files in order to work correctly.
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See [[GotCloud: Genetic Reference and Resource Files]] for detailed information about the multiple required reference files for the variant calling pipeline, including:
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See [[GotCloud: Genetic Reference and Resource Files]] for detailed information about the required reference files, including:
   
* How to obtain default references
 
* How to obtain default references
 
* Configuration keys & default values
 
* Configuration keys & default values
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* [[GotCloud: Genetic Reference and Resource Files#OMNI VCF Files|OMNI VCF Files]]
 
* [[GotCloud: Genetic Reference and Resource Files#OMNI VCF Files|OMNI VCF Files]]
 
* [[GotCloud: Genetic Reference and Resource Files#INDEL VCF File(s)|INDEL VCF File(s)]]
 
* [[GotCloud: Genetic Reference and Resource Files#INDEL VCF File(s)|INDEL VCF File(s)]]
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== Configuration File ==
 
== Configuration File ==
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/11846"

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