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Revision as of 18:33, 23 October 2014
, 18:33, 23 October 2014→Targeted/Exome Sequencing Settings
(default is 0, do not extend the target region)
(default is 0, do not extend the target region)
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|SAMTOOLS_VIEW_TARGET_ONLY || When performing samtools view, if set to true, exclude off-target regions
|SAMTOOLS_VIEW_TARGET_ONLY || '''true''': speeds up processing by excluding off-target regions initially when performing samtools view
You may not want to set this to true due to it may:
'''false''' (default): off-target regions are not excluded when performing samtools view, but are excluded at a later step
'''Warning:''' You may not want to set this to true due to it may:
*''make command line too long''
*''make command line too long''
*''produce an error if reads overlap multiple targeted regions''
*''produce an error if reads overlap multiple targeted regions''
