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Jump to navigationJump to searchGotCloud: Variant Calling Pipeline (view source)
Revision as of 18:54, 30 March 2015
, 18:54, 30 March 2015→Running the Automatic Test
** If you see <code>Successfully ran the test case, congratulations!</code>, then you are ready to run snpcall on your own samples.
** If you see <code>Successfully ran the test case, congratulations!</code>, then you are ready to run snpcall on your own samples.
*Run <code>ldrefine</code> pipeline test:
*Run <code>ldrefine</code> pipeline test:
gotcloud snpcall --test OUTPUT_DIR
gotcloud ldrefine --test OUTPUT_DIR
** Where <code>OUTPUT_DIR</code> is the directory where you want to store the test results
** Where <code>OUTPUT_DIR</code> is the directory where you want to store the test results
** If you see <code>Successfully ran the test case, congratulations!</code>, then you are ready to run ldrefine on your own samples.
** If you see <code>Successfully ran the test case, congratulations!</code>, then you are ready to run ldrefine on your own samples.
