Changes

Pvalue: P-value calculated assuming a sum of binomial distributions to represent the number of index SNPs (or LD proxies) that overlap a dataset compared to the expectation observed in the matched control sets

Pvalue: P-value calculated assuming a sum of binomial distributions to represent the number of index SNPs (or LD proxies) that overlap a dataset compared to the expectation observed in the matched control sets

*Note:  SNPs that cannot be converted from rsID to chr:pos format are listed in the output file rsid.index.snp.txt.  SNPs for which there are no LD proxies or no MAF data available are listed in the output file nonannoted.index.snp.txt.

*Note:   

**SNPs that cannot be converted from rsID to chr:pos format are listed in the output file rsid.index.snp.txt.  SNPs for which there are no LD proxies or no MAF data available are listed in the output file nonannoted.index.snp.txt.

== Testing GREGOR ==

== Testing GREGOR ==