66
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Results Output
*Note:
*Note:
**SNPs that cannot be converted from rsID to chr:pos format are listed in the output file rsid.index.snp.txt. SNPs for which there are no LD proxies or no MAF data available are listed in the output file nonannoted.index.snp.txt.
**SNPs that cannot be converted from rsID to chr:pos format are listed in the output file rsid.index.snp.txt. SNPs for which there are no LD proxies or no MAF data available are listed in the output file nonannoted.index.snp.txt.
** If one index SNP and its LD-buddies are not in any bed region, the Pvalue could be defined to "NA"
== Testing GREGOR ==
== Testing GREGOR ==
