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=== Locations of Files ===
=== Locations of Files ===
* List of Sample Numbers
**
* Recalibrated and deduced BAM Files (can be found in the following locations)
** /net/sardinia/progenia/SardiNIA/Pula_Final/BAMS/by_sample/*.bam
** /net/sardinia/progenia/SardiNIA/recal_20150210/*.recal.bam
** /net/sardinia/progenia/SardiNIA/recal_20150330/*.recal.bam
** /net/mrtoad/stuff.from.csgspare/gpistis/Deduped_recalibrated_BAMS/*.uniq.dedup.recal.bam
** /net/sardinia/progenia/SardiNIA/bams/decoy_ref/by_sample/*.bam
** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/RealigningCarlosSamples/Giorgio_Carlo_merged_20150412/*.CG.recal.merged.bam (some BAM files were generated by Carlo and Giorgio separately for the same individual. These BAMs were merged, recalibrated, and deduped and can be found here)
=== What is Complete ===
=== What is Complete ===
