Changes

SardiNIA (view source)

607 bytes added , 10:24, 27 June 2016

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* List of paths to BAMs used in this data freeze

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* List of paths to BAMs used in this data freeze (Index file)

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** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPCALL/FINAL_index_20150504.index

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* Pedigree (Not too helpful -- used for SNPCall)

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** All Samples: /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPCALL/FINAL_ped_20150510.ped

* QC Summary

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* SNPCall Results (Produced with Gotcloud SNPCall and phased using Beagle4)

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** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPCALL/beagle4/chr*/chr*.filtered.PASS.beagled.vcf.gz

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* IndelCall Results (Produced with Gotcloud Indel)

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** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/INDELCALL/indel/final/all.genotypes.sites.vcf.gz

* mtDNA Copy Number Summary

87

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