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607 bytes added
, 10:24, 27 June 2016
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− | * List of paths to BAMs used in this data freeze | + | * List of paths to BAMs used in this data freeze (Index file) |
− | ** | + | ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPCALL/FINAL_index_20150504.index |
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| + | * Pedigree (Not too helpful -- used for SNPCall) |
| + | ** All Samples: /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPCALL/FINAL_ped_20150510.ped |
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| * QC Summary | | * QC Summary |
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| + | * SNPCall Results (Produced with Gotcloud SNPCall and phased using Beagle4) |
| + | ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPCALL/beagle4/chr*/chr*.filtered.PASS.beagled.vcf.gz |
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| + | * IndelCall Results (Produced with Gotcloud Indel) |
| + | ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/INDELCALL/indel/final/all.genotypes.sites.vcf.gz |
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| * mtDNA Copy Number Summary | | * mtDNA Copy Number Summary |