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'''<sup>†</sup>''' Binary executables are NOT guaranteed to run on every LINUX machine. Please compile from source files if you have trouble with the executable, or clone from the [https://github.com/Santy-8128/DosageConvertor github repository]. Else contact the author [mailto:sayantan@umich.edu Sayantan Das].
'''<sup>†</sup>''' Binary executables are NOT guaranteed to run on every LINUX machine. Please compile from source files if you have trouble with the executable, or clone from the [https://github.com/Santy-8128/DosageConvertor github repository]. Else contact the author [mailto:sayantan@umich.edu Sayantan Das].
= Usage=
= Installation =
Users should follow the following steps to compile '''DosageConvertor ''' (if they downloaded the source files).
Users should follow the following steps to compile '''DosageConvertor ''' (if they downloaded the source files).
make
make
= Usage=
== Convert to PLINK Files ==
== Convert to PLINK Files ==
./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz
./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz
--info TestDataImputedVCF.info (NOT mandatory)
--info TestDataImputedVCF.info (optional)
--prefix OutPrefix
--prefix OutPrefix
--type plink (default)
--type plink (default)
./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz
./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz
--info TestDataImputedVCF.info (NOT mandatory)
--info TestDataImputedVCF.info (optional)
--prefix OutPrefix
--prefix OutPrefix
--type mach
--type mach
