Changes

=== User-supplied LD ===

=== User-supplied LD ===

If new_fugue is installed, LocusZoom will automatically compute LD between the reference SNP and all other SNPs within each region to be plotted. However, in some instances, you may wish to provide your own file with LD information. This can be done with the <code>--ld</code> option, which requires a file of the following format:

If new_fugue is installed, LocusZoom will automatically compute LD between the reference SNP and all other SNPs within each region to be plotted. However, you may wish to provide your own file with LD information. This can be done with the <code>--ld</code> option, which requires a file of the following format:

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