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From Genome Analysis Wiki
Jump to navigationJump to search→Step 4: Install LocusZoom
*the LocusZoom python application
*the LocusZoom python application
*the R script used for generating plots
*the R script used for generating plots
*genotype files (used for computing LD) from hapmap and 1000G (build hg18 only)
* UCSC human genome '''build hg18''' data, including:
*a SQLite database file containing tables describing SNP positions, SNP annotations, gene and exon locations, and recombination rates (build hg18 only)
**genotype files (used for computing LD) from hapmap and 1000G
**a SQLite database file containing tables describing SNP positions, SNP annotations, gene and exon locations, and recombination rates
Simply unpack the tar to your directory of choice by doing the following:
Simply unpack the tar to your directory of choice by doing the following:
It is important that this directory structure remain intact. To make launching locusoom easier, you could create a link to it from /usr/local/bin, for example:
It is important that this directory structure remain intact. To make launching locusoom easier, you could create a link to it from /usr/local/bin, for example:
<pre>ln -s bin/locuszoom /usr/local/bin/locuszoom</pre>
<pre>ln -s bin/locuszoom /usr/local/bin/locuszoom</pre>
== Input ==
== Input ==
