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For annotation:
For annotation:
*We used various sources including RefSeq Genes (refFlat), TFBS Conserved (tfbsConsSites), and Conservation (phaseConsElements44wayPlacental), all available from the [http://genome.usc.edu UCSC Genome Browser].
*We used various sources including RefSeq Genes (refFlat), TFBS Conserved (tfbsConsSites), and Conservation (phaseConsElements44wayPlacental), all available from the [http://genome.usc.edu UCSC Genome Browser].
*[ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_03/pilot1 Recombination rates from HapMap]
*[ftp://ftp.hapmap.org/hapmap/recombination/2008-03_rel22_B36/rates/ Recombination rates from HapMap]
== Input ==
== Input ==
