Changes

From Genome Analysis Wiki
Jump to navigationJump to search
Line 96: Line 96:  
LocusZoom uses various sources of information for annotation, positions, and calculating LD.  
 
LocusZoom uses various sources of information for annotation, positions, and calculating LD.  
   −
For LD:  
+
For computing LD:  
*[http://hapmap.ncbi.nlm.nih.gov/downloads/phasing/2007-08_rel22/phased HapMap phased haplotypes]
+
*[ftp://ftp.hapmap.org/hapmap/genotypes/2008-10_phaseII/ HapMap genotypes] for build 36, populations CEU, YRI, and JPT+CHB.
*[ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_03/pilot1 1000 Genomes phased haplotypes]
+
*[ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_03/pilot1 1000 Genomes genotypes]
    
For SNP, gene, and exon positions:  
 
For SNP, gene, and exon positions:  
239

edits

Navigation menu