Changes

From Genome Analysis Wiki
Jump to: navigation, search

VcfCodingSnps

1,115 bytes added, 02:54, 20 September 2010
no edit summary
8 151936 . a g 32 . depth=105;duples=hets;mac=2;tdt=0/2;5'UTR=RPL23A_20_869(uc010lra.1)[-];5'UTR=RPL23A_20_869(uc003woq.2)[-];5'UTR=RPL23A_20_869(uc010lrb.1)[-] GT:GQ:GD 0/1:42:44 0/1:23:47 0/0:39:14
8 152578 . c t 87 . depth=108;5'UTR=RPL23A_20_869(uc010lra.1)[-];5'UTR=RPL23A_20_869(uc003woq.2)[-];5'UTR=RPL23A_20_869(uc010lrb.1)[-] GT:GQ:GD 1/1:95:31 1/1:89:30 1/1:100:47
 
 
Output log file headlines:
 
##chr pos ref alt ucsc_name genestrend genestart geneend ref_codon ref_AA alt_codon alt_AA codon_start codon_end genesymbol codonCount type
chr2 214811129 T c uc010fuz.1 + 213857360 214814327 CTA Leu CCA Pro 214811128 214811130 SPAG16 433 NON_SYNONYMOUS_CODING
chr2 214811129 T c uc002veq.1 + 213857360 214983470 . . . . . . SPAG16 . INTRONIC
chr2 214811129 T c uc002ver.1 + 213857360 214983470 . . . . . . SPAG16 . INTRONIC
chr2 214811174 T a uc010fuz.1 + 213857360 214814327 . . . . . . SPAG16 . 3'UTR
chr2 214811174 T a uc002veq.1 + 213857360 214983470 . . . . . . SPAG16 . INTRONIC
76
edits

Navigation menu