3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
[[Category:Software|Bam]]
[[Category:Software]]
[[Category:libbam]]
[[Category:C++]]
[[Category:libStatGen]]
[[Category:libStatGen BAM]]
= bam Executable =
= bam Executable =
When the pipeline is compiled, the SAM/BAM executable, "bam" is generated in the pipeline/bam/ directory.
When statgen is compiled, the SAM/BAM executable, "bam" is generated in the statgen/src/bin/ directory.
The software reads the beginning of an input file to determine if it is SAM/BAM. To determine the format (SAM/BAM) of the output file, the software checks the output file's extension. If the extension is ".bam" it writes a BAM file, otherwise it writes a SAM file.
The software reads the beginning of an input file to determine if it is SAM/BAM. To determine the format (SAM/BAM) of the output file, the software checks the output file's extension. If the extension is ".bam" it writes a BAM file, otherwise it writes a SAM file.
