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BamUtil

294 bytes added, 11:59, 13 June 2011
Bam Format
# specified name with _only_<in1>.bam with records only in the in1 file
# specified name with _only_<in2>.bam with records only in the in2 file
 
When a record is found in both input files, but a difference is found, the record from the first file is written with additional tags to indicate the values from the second file.
 
The following tags are used:
* ZF - Flag
* ZP - Pos
* ZC - Cigar
* ZS - Sequence
* ZQ - Base Quality
* ZT - Tags
== readReference ==

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