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294 bytes added
, 12:59, 13 June 2011
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| # specified name with _only_<in1>.bam with records only in the in1 file | | # specified name with _only_<in1>.bam with records only in the in1 file |
| # specified name with _only_<in2>.bam with records only in the in2 file | | # specified name with _only_<in2>.bam with records only in the in2 file |
| + | |
| + | When a record is found in both input files, but a difference is found, the record from the first file is written with additional tags to indicate the values from the second file. |
| + | |
| + | The following tags are used: |
| + | * ZF - Flag |
| + | * ZP - Pos |
| + | * ZC - Cigar |
| + | * ZS - Sequence |
| + | * ZQ - Base Quality |
| + | * ZT - Tags |
| | | |
| == readReference == | | == readReference == |