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Revision as of 07:07, 5 August 2011
, 07:07, 5 August 2011→Shoud I use MaCH or minimac?
This page documents how to impute 1000 Genome SNPs using [[Minimac]], which is typically the preferred approach for imputation using large reference panels such as the 1000 Genomes data. For information on how to carry out 1000 Genomes Imputation using [[MaCH]], see [[MaCH: 1000 Genomes Imputation Cookbook]]. For pointers on how to carry out 1000 Genomes Imputation using [[IMPUTE2]], see [[IMPUTE2: 1000 Genomes Imputation Cookbook]].
This page documents how to impute 1000 Genome SNPs using [[Minimac]], which is typically the preferred approach for imputation using large reference panels such as the 1000 Genomes data. For information on how to carry out 1000 Genomes Imputation using [[MaCH]], see [[MaCH: 1000 Genomes Imputation Cookbook]]. For pointers on how to carry out 1000 Genomes Imputation using [[IMPUTE2]], see [[IMPUTE2: 1000 Genomes Imputation Cookbook]].
== Shoud I use MaCH or minimac? ==
== Should I use MaCH or minimac? ==
The imputation quality of both approaches is comparable.
The imputation quality of both approaches is comparable.
