Talk:Minimac: 1000 Genomes Imputation Cookbook

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Issues to resolve:

  • No --prefix in MACH example command line (both for single job and in parallel)
  • Should make sure MACH output is gzipped (I think Yun has enabled this by default).

The minimac input file names don't match either the 1000G reference panels from our website or the output files from the previous section.