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, 11:13, 4 September 2011
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| ** If the input bam files have more than one lane and only some of them need to be checked, they can be specified by --lanes 1,3,5 whatever the number of lanes needed. | | ** If the input bam files have more than one lane and only some of them need to be checked, they can be specified by --lanes 1,3,5 whatever the number of lanes needed. |
| ** In order for this to work, the lane info has to be encoded in the read name such that lane number is the second field with the delimit of ":". | | ** In order for this to work, the lane info has to be encoded in the read name such that lane number is the second field with the delimit of ":". |
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− | * Plot filters
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− | ** GC bias plot requires large memory (genome size which is ~3Gb) and if it is not desired to generate it to save memory it can be disabled by
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− | --gc_plot_skip
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| * Region list | | * Region list |