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Revision as of 08:12, 19 September 2011
, 08:12, 19 September 2011→Imputation into Phased Haplotypes - minimac
| <code>--haps target.hap.gz </code>
| <code>--haps target.hap.gz </code>
| Phased haplotypes where missing genotypes will be imputed.
| Phased haplotypes where missing genotypes will be imputed.
|-
<!-- |-
| <code>--rounds 5</code>
| <code>--rounds 5</code>
| Rounds of optimization for model parameters, which describe population recombination rates and per SNP error rates.
| Rounds of optimization for model parameters, which describe population recombination rates and per SNP error rates.
| <code>--states 200</code>
| <code>--states 200</code>
| Maximum number of reference (or target) haplotypes to be examined during parameter optimization.
| Maximum number of reference (or target) haplotypes to be examined during parameter optimization.
!-->
|-
|-
| <code>--prefix imputed</code>
| <code>--prefix imputed</code>
